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      The deduced role of a chitinase containing two nonsynergistic catalytic domains

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          Abstract

          Multiple catalytic domains in one chitinase have been shown to function synergistically during chitin degradation. Here, using biochemical and structural characterization, an insect chitinase was revealed to have two nonsynergistic catalytic domains, which may be involved in chitin synthesis instead of chitin degradation.

          Abstract

          The glycoside hydrolase family 18 chitinases degrade or alter chitin. Multiple catalytic domains in a glycoside hydrolase family 18 chitinase function synergistically during chitin degradation. Here, an insect group III chitinase from the agricultural pest Ostrinia furnacalis ( OfChtIII) is revealed to be an arthropod-conserved chitinase that contains two nonsynergistic GH18 domains according to its catalytic properties. Both GH18 domains are active towards single-chained chitin substrates, but are inactive towards insoluble chitin substrates. The crystal structures of each unbound GH18 domain, as well as of GH18 domains complexed with hexa- N-acetyl-chitohexaose or penta- N-acetyl-chitopentaose, suggest that the two GH18 domains possess endo-specific activities. Physiological data indicated that the developmental stage-dependent gene-expression pattern of OfChtIII was the same as that of the chitin synthase OfChsA but significantly different from that of the chitinase OfChtI, which is indispensable for cuticular chitin degradation. Additionally, immunological staining indicated that OfChtIII was co-localized with OfChsA. Thus, OfChtIII is most likely to be involved in the chitin-synthesis pathway.

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          Most cited references16

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          CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues

          Cavities on a proteins surface as well as specific amino acid positioning within it create the physicochemical properties needed for a protein to perform its function. CASTp () is an online tool that locates and measures pockets and voids on 3D protein structures. This new version of CASTp includes annotated functional information of specific residues on the protein structure. The annotations are derived from the Protein Data Bank (PDB), Swiss-Prot, as well as Online Mendelian Inheritance in Man (OMIM), the latter contains information on the variant single nucleotide polymorphisms (SNPs) that are known to cause disease. These annotated residues are mapped to surface pockets, interior voids or other regions of the PDB structures. We use a semi-global pair-wise sequence alignment method to obtain sequence mapping between entries in Swiss-Prot, OMIM and entries in PDB. The updated CASTp web server can be used to study surface features, functional regions and specific roles of key residues of proteins.
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            Insect chitinase and chitinase-like proteins.

            Insect chitinases belong to family 18 glycosylhydrolases that hydrolyze chitin by an endo-type of cleavage while retaining the anomeric beta-(1-->4) configuration of products. There are multiple genes encoding chitinases and chitinase-like proteins in all insect species studied using bioinformatics searches. These chitinases differ in size, domain organization, physical, chemical and enzymatic properties, and in patterns of their expression during development. There are also differences in tissue specificity of expression. Based on a phylogenetic analysis, insect chitinases and chitinase-like proteins have been classified into several different groups. Results of RNA interference experiments demonstrate that at least some of these chitinases belonging to different groups serve non-redundant functions and are essential for insect survival, molting or development. Chitinases have been utilized for biological control of insect pests on transgenic plants either alone or in combination with other insecticidal proteins. Specific chitinases may prove to be useful as biocontrol agents and/or as vaccines.
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              The chitinolytic machinery of Serratia marcescens--a model system for enzymatic degradation of recalcitrant polysaccharides.

              The chitinolytic machinery of Serratia marcescens is one of the best known enzyme systems for the conversion of insoluble polysaccharides. This machinery includes four chitin-active enzymes: ChiC, an endo-acting non-processive chitinase; ChiA and ChiB, two processive chitinases moving along chitin chains in opposite directions; and CBP21, a surface-active CBM33-type lytic polysaccharide monooxygenase that introduces chain breaks by oxidative cleavage. Furthermore, an N-acetylhexosaminidase or chitobiase converts the oligomeric products from the other enzymes to monomeric N-acetylglucosamine. Here we discuss the catalytic mechanisms of these enzymes as well as the structural basis of each enzyme's specific role in the chitin degradation process. We also discuss how knowledge of this enzyme system may be extrapolated to other enzyme systems for conversion of insoluble polysaccharides, in particular conversion of cellulose by cellulases and GH61-type lytic polysaccharide monooxygenases. © 2013 The Authors Journal compilation © 2013 FEBS.
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                Author and article information

                Journal
                Acta Crystallogr D Struct Biol
                Acta Crystallogr D Struct Biol
                Acta Cryst. D
                Acta Crystallographica. Section D, Structural Biology
                International Union of Crystallography
                2059-7983
                01 January 2018
                1 January 2018
                1 January 2018
                : 74
                : Pt 1 ( publisher-idID: d180100 )
                : 30-40
                Affiliations
                [a ]State Key Laboratory of Fine Chemical Engineering, School of Life Science and Biotechnology and School of Software, Dalian University of Technology , No. 2 Linggong Road, Dalian, Liaoning 116024, People’s Republic of China
                [b ]Institute of Plant Protection, Chinese Academy of Agricultural Sciences , No. 2 West Yuanmingyuan Road, Beijing 100193, People’s Republic of China
                Author notes
                Correspondence e-mail: qingyang@ 123456dlut.edu.cn
                [‡]

                The first threee authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0001-9768-5496
                Article
                jt5022 ACSDAD S2059798317018289
                10.1107/S2059798317018289
                5786006
                29372897
                29818fd5-be01-458d-b2d5-6a49f519fa07
                © Liu et al. 2018

                This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.

                History
                : 04 September 2017
                : 21 December 2017
                Page count
                Pages: 11
                Funding
                Funded by: National Natural Science Foundation of China
                Award ID: 31425021
                Funded by: Ministry of Science and Technology of the People’s Republic of China
                Award ID: 2017YFD0200501
                Award ID: 2017YFD0200502
                Funded by: Liaoning University
                Award ID: LJQ2014006
                Funded by: Fundamental Research Funds for the Central Universities
                Award ID: DUT16QY48
                Award ID: DUT16TD22
                Funded by: State Key Laboratory for Biology of Plant Diseases and Insect Pests
                Award ID: SKLOF201706
                This work was funded by National Natural Science Foundation of China grant 31425021. Ministry of Science and Technology of the People’s Republic of China grants 2017YFD0200501 and 2017YFD0200502. Liaoning University grant LJQ2014006. Fundamental Research Funds for the Central Universities grants DUT16QY48 and DUT16TD22. State Key Laboratory for Biology of Plant Diseases and Insect Pests grant SKLOF201706.
                Categories
                Research Papers

                chitin,chitinase,chitin synthesis,chitin degradation,synergy

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