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      Polymorphisms in the Receptor Tyrosine Kinase MERTK Gene Are Associated with Multiple Sclerosis Susceptibility

      research-article
      1 , 2 , 3 , The Australia and New Zealand Multiple Sclerosis Genetics Consortium (ANZgene), 1 , 2 , 1 , 2 , 1 , 2 , *
      PLoS ONE
      Public Library of Science

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          Abstract

          Multiple sclerosis (MS) is a debilitating, chronic demyelinating disease of the central nervous system affecting over 2 million people worldwide. The TAM family of receptor tyrosine kinases ( TYRO3, AXL and MERTK) have been implicated as important players during demyelination in both animal models of MS and in the human disease. We therefore conducted an association study to identify single nucleotide polymorphisms (SNPs) within genes encoding the TAM receptors and their ligands associated with MS. Analysis of genotype data from a genome-wide association study which consisted of 1618 MS cases and 3413 healthy controls conducted by the Australia and New Zealand Multiple Sclerosis Genetics Consortium (ANZgene) revealed several SNPs within the MERTK gene (Chromosome 2q14.1, Accession Number NG_011607.1) that showed suggestive association with MS. We therefore interrogated 28 SNPs in MERTK in an independent replication cohort of 1140 MS cases and 1140 healthy controls. We found 12 SNPs that replicated, with 7 SNPs showing p-values of less than 10 −5 when the discovery and replication cohorts were combined. All 12 replicated SNPs were in strong linkage disequilibrium with each other. In combination, these data suggest the MERTK gene is a novel risk gene for MS susceptibility.

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          Most cited references28

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          Risk alleles for multiple sclerosis identified by a genomewide study.

          Multiple sclerosis has a clinically significant heritable component. We conducted a genomewide association study to identify alleles associated with the risk of multiple sclerosis. We used DNA microarray technology to identify common DNA sequence variants in 931 family trios (consisting of an affected child and both parents) and tested them for association. For replication, we genotyped another 609 family trios, 2322 case subjects, and 789 control subjects and used genotyping data from two external control data sets. A joint analysis of data from 12,360 subjects was performed to estimate the overall significance and effect size of associations between alleles and the risk of multiple sclerosis. A transmission disequilibrium test of 334,923 single-nucleotide polymorphisms (SNPs) in 931 family trios revealed 49 SNPs having an association with multiple sclerosis (P<1x10(-4)); of these SNPs, 38 were selected for the second-stage analysis. A comparison between the 931 case subjects from the family trios and 2431 control subjects identified an additional nonoverlapping 32 SNPs (P<0.001). An additional 40 SNPs with less stringent P values (<0.01) were also selected, for a total of 110 SNPs for the second-stage analysis. Of these SNPs, two within the interleukin-2 receptor alpha gene (IL2RA) were strongly associated with multiple sclerosis (P=2.96x10(-8)), as were a nonsynonymous SNP in the interleukin-7 receptor alpha gene (IL7RA) (P=2.94x10(-7)) and multiple SNPs in the HLA-DRA locus (P=8.94x10(-81)). Alleles of IL2RA and IL7RA and those in the HLA locus are identified as heritable risk factors for multiple sclerosis. Copyright 2007 Massachusetts Medical Society.
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            Homeostatic regulation of the immune system by receptor tyrosine kinases of the Tyro 3 family.

            Q. Lu, G Lemke (2001)
            Receptor tyrosine kinases and their ligands mediate cell-cell communication and interaction in many organ systems, but have not been known to act in this capacity in the mature immune system. We now provide genetic evidence that three closely related receptor tyrosine kinases, Tyro 3, Axl, and Mer, play an essential immunoregulatory role. Mutant mice that lack these receptors develop a severe lymphoproliferative disorder accompanied by broad-spectrum autoimmunity. These phenotypes are cell nonautonomous with respect to lymphocytes and result from the hyperactivation of antigen-presenting cells in which the three receptors are normally expressed.
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              Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.

              (2009)
              To identify multiple sclerosis (MS) susceptibility loci, we conducted a genome-wide association study (GWAS) in 1,618 cases and used shared data for 3,413 controls. We performed replication in an independent set of 2,256 cases and 2,310 controls, for a total of 3,874 cases and 5,723 controls. We identified risk-associated SNPs on chromosome 12q13-14 (rs703842, P = 5.4 x 10(-11); rs10876994, P = 2.7 x 10(-10); rs12368653, P = 1.0 x 10(-7)) and upstream of CD40 on chromosome 20q13 (rs6074022, P = 1.3 x 10(-7); rs1569723, P = 2.9 x 10(-7)). Both loci are also associated with other autoimmune diseases. We also replicated several known MS associations (HLA-DR15, P = 7.0 x 10(-184); CD58, P = 9.6 x 10(-8); EVI5-RPL5, P = 2.5 x 10(-6); IL2RA, P = 7.4 x 10(-6); CLEC16A, P = 1.1 x 10(-4); IL7R, P = 1.3 x 10(-3); TYK2, P = 3.5 x 10(-3)) and observed a statistical interaction between SNPs in EVI5-RPL5 and HLA-DR15 (P = 0.001).
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2011
                8 February 2011
                : 6
                : 2
                : e16964
                Affiliations
                [1 ]Multiple Sclerosis Division, Florey Neuroscience Institutes, University of Melbourne, Melbourne, Victoria, Australia
                [2 ]Centre for Neuroscience, University of Melbourne, Melbourne, Victoria, Australia
                [3 ]Menzies Research Institute, University of Tasmania, Hobart, Tasmania, Australia
                University of Texas M. D. Anderson Cancer Center, United States of America
                Author notes

                Conceived and designed the experiments: GZMM JS TJK MDB JF. Performed the experiments: GZMM JF. Analyzed the data: GZMM JS JF. Contributed reagents/materials/analysis tools: GZMM JS TJK MDB JF. Wrote the paper: GZMM JS TJK MDB JF.

                ¶ Membership of the ANZgene Consortium is provided in the Acknowledgments.

                Article
                PONE-D-10-04078
                10.1371/journal.pone.0016964
                3035668
                21347448
                27b0bced-7b76-43b3-a9d8-6ba799537bc7
                Ma et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
                History
                : 28 October 2010
                : 10 January 2011
                Page count
                Pages: 6
                Categories
                Research Article
                Biology
                Genetics
                Human Genetics
                Genetic Association Studies
                Genome-Wide Association Studies
                Population Genetics
                Genetic Polymorphism
                Genetics of Disease
                Genome-Wide Association Studies
                Genomics
                Genome Analysis Tools
                Genome-Wide Association Studies
                Molecular Cell Biology
                Signal Transduction
                Signaling Cascades
                Tyrosine Kinase Signaling Cascade
                Medicine
                Clinical Immunology
                Autoimmune Diseases
                Multiple Sclerosis
                Neurology
                Demyelinating Disorders
                Multiple Sclerosis

                Uncategorized
                Uncategorized

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