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      Notes on the taxonomic status and distribution of some Cylindrotomidae (Diptera, Tipuloidea), with emphasis on Japanese species

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          Abstract

          A morphological and molecular study of 17 Cylindrotomidae species revealed that the two subspecies of Cylindrotoma distinctissima , the Nearctic C. americana Osten Sacken, 1865, stat. reval. and the Palearctic C. distinctissima (Meigen, 1818), represent separated lineages and consequently are raised to species level. Cylindrotoma japonica Alexander, 1919, syn. nov. and C. distinctissima alpestris Peus, 1952, syn. nov. are now known to be junior synonyms of C. distinctissima . Triogma kuwanai limbinervis Alexander, 1953, syn. nov. and T. nimbipennis Alexander, 1941, syn. nov. are now placed into synonymy under Triogma kuwanai (Alexander, 1913). The Japanese Cylindrotomidae are all redescribed and all available literature and distribution data are summarised. Supplementary descriptions and illustrations for male and female terminalia of Cylindrotoma nigriventris Loew, 1849, Diogma dmitrii Paramonov, 2005, Liogma nodicornis (Osten Sacken, 1865), Phalacrocera replicata (Linnaeus, 1758), P. tipulina Osten Sacken, 1865, and Triogma trisulcata (Schummel, 1829) are provided. The following new distribution records are outlined; Diogma caudata Takahashi, 1960 from Arkhangelsk Oblast, Russia; D. glabrata (Meigen, 1818) from Belarus, Latvia, and Altai Republic, Amur Oblast, Novgorod Oblast, Magadan Oblast, Samara Oblast, and Kuril Islands (Shikotan I and Paramushir I) in Russia; Liogma serraticornis Alexander, 1919 from Khabarovsk Krai, Russia; Phalacrocera replicata from Khabarovsk Krai, Russia; and the presence of Cylindrotoma nigriventris in Altai Republic, Russia is confirmed.

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          CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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            DnaSP v5: a software for comprehensive analysis of DNA polymorphism data.

            DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensive DNA polymorphism analyses on large datasets. Among other features, the newly implemented methods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (iii) analyses on insertion/deletion polymorphism data; (iv) visualizing sliding window results integrated with available genome annotations in the UCSC browser. Freely available to academic users from: (http://www.ub.edu/dnasp).
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              A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

              The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximum- likelihood principle, which clearly satisfies these requirements. The core of this method is a simple hill-climbing algorithm that adjusts tree topology and branch lengths simultaneously. This algorithm starts from an initial tree built by a fast distance-based method and modifies this tree to improve its likelihood at each iteration. Due to this simultaneous adjustment of the topology and branch lengths, only a few iterations are sufficient to reach an optimum. We used extensive and realistic computer simulations to show that the topological accuracy of this new method is at least as high as that of the existing maximum-likelihood programs and much higher than the performance of distance-based and parsimony approaches. The reduction of computing time is dramatic in comparison with other maximum-likelihood packages, while the likelihood maximization ability tends to be higher. For example, only 12 min were required on a standard personal computer to analyze a data set consisting of 500 rbcL sequences with 1,428 base pairs from plant plastids, thus reaching a speed of the same order as some popular distance-based and parsimony algorithms. This new method is implemented in the PHYML program, which is freely available on our web page: http://www.lirmm.fr/w3ifa/MAAS/.
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                Author and article information

                Contributors
                Journal
                Zookeys
                Zookeys
                2
                urn:lsid:arphahub.com:pub:45048D35-BB1D-5CE8-9668-537E44BD4C7E
                urn:lsid:zoobank.org:pub:91BD42D4-90F1-4B45-9350-EEF175B1727A
                ZooKeys
                Pensoft Publishers
                1313-2989
                1313-2970
                2022
                24 January 2022
                : 1083
                : 13-88
                Affiliations
                [1 ] Center for Marine Environmental Studies (CMES), Ehime University, Matsuyama, Ehime 790-8577, Japan
                [2 ] Zoological Institute, Russian Academy of Sciences, 1 Universitetskaya Emb., St Petersburg 199034, Russia
                [3 ] Graduate School of Science and Engineering, Ehime University, 2–5 Bunkyo-cho, Matsuyama, Ehime, 790-8577 Japan
                [4 ] Echigo-Matsunoyama Museum of Natural Sciences, ‘Kyororo’, 1712-2 Matsunoyama, Tôkamachi, 942-1411, Japan
                [5 ] Department of Ecology, Faculty of Sciences, Universidad Católica de la Santísima Concepción, 409054 Concepción, Chile
                [6 ] Graduate School of Human and Environmental Studies, Kyoto University, Sakyo-ku, Yoshida-nihonmatsu-cho, Kyoto, 606-8501 Japan
                Author notes
                Corresponding author: Levente-Péter Kolcsár ( kolcsar.peter@ 123456gmail.com )

                Academic editor: F. L. da Silva

                Author information
                https://orcid.org/0000-0001-7784-2386
                https://orcid.org/0000-0003-2173-7389
                https://orcid.org/0000-0002-7062-595X
                Article
                75624
                10.3897/zookeys.1083.75624
                8803752
                35115872
                2785e65a-5a9e-447f-8355-122648400e3d
                Levente-Péter Kolcsár, Nikolai Paramonov, Yume Imada, Daichi Kato, Maribet Gamboa, Dai Shinoka, Makoto Kato, Kozo Watanabe

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 27 September 2021
                : 28 December 2021
                Categories
                Research Article
                Animalia
                Arthropoda
                Cylindrotomidae
                Diptera
                Hexapoda
                Insecta
                Invertebrata
                Nematocera
                Tipulomorpha
                Biodiversity & Conservation
                Biogeography
                Faunistics & Distribution
                Identification key
                Nomenclature
                Systematics
                Taxonomy
                Americas
                Asia
                Belarus
                China
                Denmark and Faeroes
                England
                Estonia
                Europe
                Far East
                Finland
                Japan
                North America
                Russia
                Sweden
                USA and Canada

                Animal science & Zoology
                barcode,coi sequences,comparison,cylindrotominae,ovipositor,terminalia,tipulomorpha

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