Contributors
Charlotte Vandermeulen:
ORCID: https://orcid.org/0000-0001-5026-9567
Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
SoftwareRole: ValidationRole: Writing – original draftRole: Writing – review & editing
Tina O’Grady:
ORCID: https://orcid.org/0000-0002-1283-0293
Role: Formal analysisRole: MethodologyRole: SoftwareRole: Writing – review & editing
Jerome Wayet:
ORCID: https://orcid.org/0000-0001-5113-1877
Role: Formal analysisRole: InvestigationRole: Methodology
Bartimee Galvan: Role: InvestigationRole: Methodology
Sibusiso Maseko:
ORCID: https://orcid.org/0000-0001-7025-6106
Role: InvestigationRole: Methodology
Majid Cherkaoui: Role: Methodology
Alice Desbuleux: Role: Methodology
Georges Coppin: Role: Data curationRole: Formal analysis
Julien Olivet:
ORCID: https://orcid.org/0000-0003-4115-5546
Role: VisualizationRole: Writing – review & editing
Lamya Ben Ameur:
ORCID: https://orcid.org/0000-0002-2975-8822
Role: Formal analysisRole: Methodology
Keisuke Kataoka:
ORCID: https://orcid.org/0000-0002-8263-9902
Role: Data curationRole: Resources
Seishi Ogawa: Role: Data curationRole: Resources
Olivier Hermine: Role: Resources
Ambroise Marcais:
ORCID: https://orcid.org/0000-0002-6844-7920
Role: Resources
Marc Thiry:
ORCID: https://orcid.org/0000-0002-4944-584X
Role: Formal analysisRole: InvestigationRole: MethodologyRole: Visualization
Franck Mortreux:
ORCID: https://orcid.org/0000-0002-4840-021X
Role: Formal analysisRole: MethodologyRole: ResourcesRole: Supervision
Michael A. Calderwood:
ORCID: https://orcid.org/0000-0001-6475-1418
Role: Supervision
Johan Van Weyenbergh:
ORCID: https://orcid.org/0000-0003-3234-8426
Role: Data curationRole: Formal analysisRole: Funding acquisitionRole: MethodologyRole:
Resources
Jean-Marie Peloponese:
ORCID: https://orcid.org/0000-0002-9677-9703
Role: Formal analysisRole: InvestigationRole: Methodology
Benoit Charloteaux:
ORCID: https://orcid.org/0000-0003-4282-9688
Role: Formal analysisRole: InvestigationRole: MethodologyRole: SoftwareRole: SupervisionRole:
Writing – review & editing
Anne Van den Broeke: Role: InvestigationRole: MethodologyRole: Writing – review & editing
David E. Hill:
ORCID: https://orcid.org/0000-0001-5192-0921
Role: Funding acquisitionRole: SupervisionRole: Writing – review & editing
Marc Vidal: Role: Funding acquisitionRole: SupervisionRole: Writing – review & editing
Franck Dequiedt: Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: SupervisionRole:
Writing – original draftRole: Writing – review & editing
Jean-Claude Twizere:
ORCID: https://orcid.org/0000-0002-8683-705X
Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: MethodologyRole:
Project administrationRole: SupervisionRole: ValidationRole: Writing – original draftRole:
Writing – review & editing
Charles R. M. Bangham: Role: Editor
Journal
Journal ID (nlm-ta): PLoS Pathog
Journal ID (iso-abbrev): PLoS Pathog
Journal ID (publisher-id): plos
Title:
PLoS Pathogens
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1553-7366
ISSN
(Electronic):
1553-7374
Publication date
(Electronic):
20
September
2021
Publication date Collection:
September
2021
Volume: 17
Issue: 9
Electronic Location Identifier: e1009919
Affiliations
[1
]
Laboratory of Viral Interactomes, GIGA Institute, University of Liege, Liege, Belgium
[2
]
Center for Cancer Systems Biology (CCSB), Dana-Farber Cancer Institute, Boston, Massachusetts,
United States of America
[3
]
Laboratory of Gene Expression and Cancer, GIGA Institute, University of Liege, Liege,
Belgium
[4
]
Unit of Animal Genomics, GIGA, Université de Liège (ULiège), Liège, Belgium
[5
]
Department of Genetics, Blavatnik Institute, Harvard Medical School, Boston, Massachusetts,
United States of America
[6
]
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts,
United States of America
[7
]
Laboratory of Biology and Modeling of the Cell, CNRS UMR 5239, INSERM U1210, University
of Lyon, Lyon, France
[8
]
Department of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University,
Kyoto, Japan
[9
]
Service Hématologie Adultes, Assistance Publique-Hôpitaux de Paris, Hôpital Necker
Enfants Malades, Université de Paris, Laboratoire d’onco-hématologie, Institut Necker-Enfants
Malades, INSERM U1151, Université de Paris, Paris, France
[10
]
Unit of Cell and Tissue Biology, GIGA Institute, University of Liege, Liege, Belgium
[11
]
Laboratory of Clinical and Epidemiological Virology, Rega Institute for Medical Research,
Department of Microbiology, Immunology and Transplantation, Catholic University of
Leuven, Leuven, Belgium
[12
]
Université Montpellier, IRIM CNRS UMR 9004 Montpellier, France
[13
]
Department of Human Genetics, CHU of Liege, University of Liege, Liege, Belgium
[14
]
Laboratory of Experimental Hematology, Institut Jules Bordet, Université Libre de
Bruxelles (ULB), Brussels, Belgium
Imperial College London, UNITED KINGDOM
Author notes
The authors have declared that no competing interests exist.
Author information
Article
Publisher ID:
PPATHOGENS-D-21-00613
DOI: 10.1371/journal.ppat.1009919
PMC ID: 8483338
PubMed ID: 34543356
SO-VID: 26bd1410-fb2f-48f9-b003-f37abdc62817
Copyright © © 2021 Vandermeulen et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
History
Date
received
: 23
March
2021
Date
accepted
: 27
August
2021
Page count
Figures: 8,
Tables: 1,
Pages: 29
Funding
Funded by:
Fonds de la Recherche Scientifique
Award ID: 2.5020.11
Funded by:
Walloon Region
Funded by:
funder-id http://dx.doi.org/10.13039/501100002661, Fonds De La Recherche Scientifique - FNRS;
Award ID: PDR 14461191 and Televie 30823819
Award Recipient
:
ORCID: https://orcid.org/0000-0002-8683-705X
Jean-Claude Twizere
Funded by:
funder-id http://dx.doi.org/10.13039/501100003134, Fonds pour la Formation à la Recherche dans l’Industrie et dans l’Agriculture;
Award ID: 24343558 and 29315509
Award Recipient
:
ORCID: https://orcid.org/0000-0001-5026-9567
Charlotte Vandermeulen
Funded by:
Flanders Research Foundation
Award ID: G0D6817N
Award Recipient
:
ORCID: https://orcid.org/0000-0003-3234-8426
Johan Van Weyenbergh
Funded by:
KU Leuven grant
Award ID: Vaast Leysen Leerstoel
Award Recipient
:
ORCID: https://orcid.org/0000-0003-3234-8426
Johan Van Weyenbergh
Funded by:
funder-id http://dx.doi.org/10.13039/100000002, National Institutes of Health;
Award ID: P50HG004233
Award Recipient
:
Marc Vidal
Funded by:
funder-id http://dx.doi.org/10.13039/100000002, National Institutes of Health;
Award ID: U41HG001715
Award Recipient
:
Marc Vidal
Computational resources have been provided by the Consortium des Équipements de Calcul
Intensif (CÉCI), funded by the Fonds de la Recherche Scientifique (FRS-FNRS, Belgium)
under Grant No. 2.5020.11 and by the Walloon Region. This work was primarily supported
by the FRS-FNRS grants PDR 14461191 and Televie 30823819 to J-C.T; Fund for Research
Training in Industry and Agriculture grants 24343558 and 29315509 to C.V.; Flanders
Research Foundation grant # G0D6817N and KU Leuven grant (“Vaast Leysen Leerstoel”)
to J.V.W; and National Institutes of Health grants P50HG004233 to M.V. and U41HG001715
to M.V., D.E.H., and M.A.C.; M.V. and F.D. are Chercheurs Qualifiés Honoraires, and
J.C.T. a Maitre de Recherche of the F.R.S.-FNRS. The funders had no role in study
design, data collection and analysis, decision to publish, or preparation of the manuscript.
Categories
Subject:
Research Article
Subject:
Biology and life sciences
Subject:
Organisms
Subject:
Viruses
Subject:
RNA viruses
Subject:
Retroviruses
Subject:
Htlv-1
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Medical Microbiology
Subject:
Microbial Pathogens
Subject:
Viral Pathogens
Subject:
Retroviruses
Subject:
Htlv-1
Subject:
Medicine and Health Sciences
Subject:
Pathology and Laboratory Medicine
Subject:
Pathogens
Subject:
Microbial Pathogens
Subject:
Viral Pathogens
Subject:
Retroviruses
Subject:
Htlv-1
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Viruses
Subject:
Viral Pathogens
Subject:
Retroviruses
Subject:
Htlv-1
Subject:
Biology and life sciences
Subject:
Genetics
Subject:
Gene expression
Subject:
RNA processing
Subject:
Alternative Splicing
Subject:
Biology and life sciences
Subject:
Biochemistry
Subject:
Nucleic acids
Subject:
RNA
Subject:
RNA processing
Subject:
Alternative Splicing
Subject:
Biology and Life Sciences
Subject:
Cell Biology
Subject:
Cellular Types
Subject:
Animal Cells
Subject:
Blood Cells
Subject:
White Blood Cells
Subject:
T Cells
Subject:
Biology and Life Sciences
Subject:
Cell Biology
Subject:
Cellular Types
Subject:
Animal Cells
Subject:
Immune Cells
Subject:
White Blood Cells
Subject:
T Cells
Subject:
Biology and Life Sciences
Subject:
Immunology
Subject:
Immune Cells
Subject:
White Blood Cells
Subject:
T Cells
Subject:
Medicine and Health Sciences
Subject:
Immunology
Subject:
Immune Cells
Subject:
White Blood Cells
Subject:
T Cells
Subject:
Medicine and Health Sciences
Subject:
Oncology
Subject:
Cancers and Neoplasms
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Interaction Networks
Subject:
Biology and life sciences
Subject:
Biochemistry
Subject:
Proteins
Subject:
RNA-binding proteins
Subject:
Biology and Life Sciences
Subject:
Computational Biology
Subject:
Genome Analysis
Subject:
Transcriptome Analysis
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Genome Analysis
Subject:
Transcriptome Analysis
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Gene Expression
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