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      Valid publication of four additional phylum names

      Author(s): 1 , 2
      Publication date Created:
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      Journal: International Journal of Systematic and Evolutionary Microbiology
      Publisher: Microbiology Society

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          Abstract

          The International Code of Nomenclature of Prokaryotes (ICNP) now includes the phylum category. For the purpose of the valid publication of their names under the ICNP, we consider here four phyla. Slightly modified descriptions of ‘ Abditibacteriota ’ Tahon et al. 2018 and ‘ Desulfobacterota ’ Waite et al. 2020 are provided to meet the requirements of the ICNP for phylum names. Methanobacteriota is proposed as a substitute for ‘ Euryarchaeota ’ Garrity and Holt 2021, while Nanobdellota is proposed to replace ‘ Nanoarchaeota ’ Huber et al. 2002, based on the genus Nanobdella Kato et al. 2022.

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          NCBI Taxonomy: a comprehensive update on curation, resources and tools

          Conrad Schoch, Stacy Ciufo, Mikhail Domrachev … (2020)
          The National Center for Biotechnology Information (NCBI) Taxonomy includes organism names and classifications for every sequence in the nucleotide and protein sequence databases of the International Nucleotide Sequence Database Collaboration. Since the last review of this resource in 2012, it has undergone several improvements. Most notable is the shift from a single SQL database to a series of linked databases tied to a framework of data called NameBank. This means that relations among data elements can be adjusted in more detail, resulting in expanded annotation of synonyms, the ability to flag names with specific nomenclatural properties, enhanced tracking of publications tied to names and improved annotation of scientific authorities and types. Additionally, practices utilized by NCBI Taxonomy curators specific to major taxonomic groups are described, terms peculiar to NCBI Taxonomy are explained, external resources are acknowledged and updates to tools and other resources are documented. Database URL: https://www.ncbi.nlm.nih.gov/taxonomy
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            TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes

            Jan Meier-Kolthoff, Joaquim Sardà Carbasse, Rosa Peinado-Olarte … (2021)
            Microbial systematics is heavily influenced by genome-based methods and challenged by an ever increasing number of taxon names and associated sequences in public data repositories. This poses a challenge for database systems, particularly since it is obviously advantageous if such data are based on a globally recognized approach to manage names, such as the International Code of Nomenclature of Prokaryotes. The amount of data can only be handled if accurate and reliable high-throughput platforms are available that are able to both comply with this demand and to keep track of all changes in an efficient and flexible way. The List of Prokaryotic names with Standing in Nomenclature (LPSN) is an expert-curated authoritative resource for prokaryotic nomenclature and is available at https://lpsn.dsmz.de . The Type (Strain) Genome Server (TYGS) is a high-throughput platform for accurate genome-based taxonomy and is available at https://tygs.dsmz.de . We here present important updates of these two previously introduced, heavily interconnected platforms for taxonomic nomenclature and classification, including new high-level facilities providing access to bioinformatic algorithms, a considerable expansion of the database content, and new ways to easily access the data.
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              Valid publication of the names of forty-two phyla of prokaryotes

              Aharon Oren, George Garrity (2021)
              After the International Committee on Systematics of Prokaryotes (ICSP) had voted to include the rank of phylum in the rules of the International Code of Nomenclature of Prokaryotes (ICNP), and following publication of the decision in the IJSEM, we here present names and formal descriptions of 42 phyla to effect valid publication of their names, based on genera as the nomenclatural types.
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                Author and article information

                Contributors
                Journal
                Title: International Journal of Systematic and Evolutionary Microbiology
                Publisher: Microbiology Society
                ISSN (Print): 1466-5026
                ISSN (Electronic): 1466-5034
                Publication date Created: September 11 2023
                Publication date (Print): September 11 2023
                Volume: 73
                Issue: 9
                Affiliations
                [1 ] Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7B, D-38124 Braunschweig, Germany
                [2 ] The Hebrew University of Jerusalem, The Institute of Life Sciences, Edmond J. Safra Campus - Givat Ram, 9190401 Jerusalem, Israel
                Article
                DOI: 10.1099/ijsem.0.006024
                SO-VID: 25ccaa8b-1757-4484-ac94-a176b18488d5
                Copyright © © 2023
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                http://creativecommons.org/licenses/by/4.0/

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