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      Bayesian optimization-driven parallel-screening of multiple parameters for the flow synthesis of biaryl compounds

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          Abstract

          Traditional optimization methods using one variable at a time approach waste time and chemicals and assume that different parameters are independent from one another. Hence, a simpler, more practical, and rapid process for predicting reaction conditions that can be applied to several manufacturing environmentally sustainable processes is highly desirable. In this study, biaryl compounds were synthesized efficiently using an organic Brønsted acid catalyst in a flow system. Bayesian optimization-assisted multi-parameter screening, which employs one-hot encoding and appropriate acquisition function, rapidly predicted the suitable conditions for the synthesis of 2-amino-2′-hydroxy-biaryls (maximum yield of 96%). The established protocol was also applied in an optimization process for the efficient synthesis of 2,2′-dihydroxy biaryls (up to 97% yield). The optimized reaction conditions were successfully applied to gram-scale synthesis. We believe our algorithm can be beneficial as it can screen a reactor design without complicated quantification and descriptors.

          Abstract

          Data-driven methodology plays an important role in the rapid identification of appropriate chemical conditions, however, optimization of multiple variables in the flow reaction remains challenging. Here, the authors report a Bayesian optimization-assisted multi-parameter screening to predict the suitable conditions to achieve the efficient synthesis of biaryl compounds in a flow system.

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          Complete field guide to asymmetric BINOL-phosphate derived Brønsted acid and metal catalysis: history and classification by mode of activation; Brønsted acidity, hydrogen bonding, ion pairing, and metal phosphates.

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            Bayesian reaction optimization as a tool for chemical synthesis

            Reaction optimization is fundamental to synthetic chemistry, from optimizing the yield of industrial processes to selecting conditions for the preparation of medicinal candidates1. Likewise, parameter optimization is omnipresent in artificial intelligence, from tuning virtual personal assistants to training social media and product recommendation systems2. Owing to the high cost associated with carrying out experiments, scientists in both areas set numerous (hyper)parameter values by evaluating only a small subset of the possible configurations. Bayesian optimization, an iterative response surface-based global optimization algorithm, has demonstrated exceptional performance in the tuning of machine learning models3. Bayesian optimization has also been recently applied in chemistry4-9; however, its application and assessment for reaction optimization in synthetic chemistry has not been investigated. Here we report the development of a framework for Bayesian reaction optimization and an open-source software tool that allows chemists to easily integrate state-of-the-art optimization algorithms into their everyday laboratory practices. We collect a large benchmark dataset for a palladium-catalysed direct arylation reaction, perform a systematic study of Bayesian optimization compared to human decision-making in reaction optimization, and apply Bayesian optimization to two real-world optimization efforts (Mitsunobu and deoxyfluorination reactions). Benchmarking is accomplished via an online game that links the decisions made by expert chemists and engineers to real experiments run in the laboratory. Our findings demonstrate that Bayesian optimization outperforms human decisionmaking in both average optimization efficiency (number of experiments) and consistency (variance of outcome against initially available data). Overall, our studies suggest that adopting Bayesian optimization methods into everyday laboratory practices could facilitate more efficient synthesis of functional chemicals by enabling better-informed, data-driven decisions about which experiments to run.
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              Modified BINOL ligands in asymmetric catalysis.

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                Author and article information

                Contributors
                washio@ar.sanken.osaka-u.ac.jp
                taki@sanken.osaka-u.ac.jp
                Journal
                Commun Chem
                Commun Chem
                Communications Chemistry
                Nature Publishing Group UK (London )
                2399-3669
                10 November 2022
                10 November 2022
                2022
                : 5
                : 148
                Affiliations
                [1 ]GRID grid.410773.6, ISNI 0000 0000 9949 0476, Department of Materials Science and Engineering, Graduate School of Science and Engineering, , Ibaraki University, ; Naka-narusawa, Hitachi, Ibaraki 316-8511 Japan
                [2 ]GRID grid.136593.b, ISNI 0000 0004 0373 3971, SANKEN, Osaka University, ; Mihogaoka, Ibaraki-shi, Osaka 567-0047 Japan
                [3 ]GRID grid.33003.33, ISNI 0000 0000 9889 5690, Pharmaceutical Organic Chemistry Department, Faculty of Pharmacy, , Suez Canal University, ; Ismailia, 41522 Egypt
                [4 ]GRID grid.136593.b, ISNI 0000 0004 0373 3971, Artificial Intelligence Research Center, , SANKEN, Osaka University, ; Suita, Japan
                [5 ]GRID grid.136593.b, ISNI 0000 0004 0373 3971, Graduate School of Pharmaceutical Sciences, , Osaka University, ; Yamada-oka, Suita-shi, Osaka 565-0871 Japan
                Author information
                http://orcid.org/0000-0002-8919-095X
                http://orcid.org/0000-0001-6172-6401
                http://orcid.org/0000-0002-9668-1888
                Article
                764
                10.1038/s42004-022-00764-7
                9814103
                22d56f14-d94c-4314-8df9-809c4a98c213
                © The Author(s) 2022

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 13 June 2022
                : 21 October 2022
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100001691, MEXT | Japan Society for the Promotion of Science (JSPS);
                Award ID: 22K06502
                Award ID: JPMJCR20R1
                Award ID: JPMJCR1666
                Award Recipient :
                Funded by: This study was funded by grants from JSPS KAKENHI Grant-in-Aid for Scientific Research (C) (No. 22K06502), Transformative Research Areas (A) 21A204 Digitalization-driven Transformative Organic Synthesis (Digi-TOS) (No. 21H05207 and 21H05217) from the Ministry of Education, Culture, Sports, Science, and Technology (MEXT), and the Japan Society for the Promotion of Science (JSPS), JST CREST (No. JPMJCR20R1), JST CREST (No. JPMJCR1666), Hoansha Foundation, and Kansai Research Foundation for Technology Promotion.
                Categories
                Article
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                © The Author(s) 2022

                synthetic chemistry methodology,cheminformatics,organocatalysis,flow chemistry

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