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      Spatial incongruence in the species richness and functional diversity of cricetid rodents

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          Abstract

          Biodiversity is multidimensional and different mechanisms can influence different dimensions. The spatial distribution of these dimensions can help in conservation decisions through the location of complementary areas with high diversity. We analyzed congruence in spatial patterns of species richness and functional diversity of cricetid rodents in the state of Oaxaca, southern Mexico, at different scales, and environmental variables related. Potential distribution models were produced for 49 species of cricetids in Maxent and superimposed to obtain potential communities in cells of 25, 50,100, 200 and 400 km 2. We estimated species richness (SR) and functional diversity (SES.FD) eliminating the species richness effect through null models. The patterns and spatial congruence of species richness and functional diversity are described. The relationships between the environmental variables (elevation, temperature, precipitation, net primary productivity and potential evapotranspiration) and the SR and SES.FD were explored using Generalized Linear Models (GLMs) and Generalized Additive Models (GAMs). The highest species richness was found in mountainous ecosystems while the highest functional diversity was in tropical forests, revealing a spatial incongruence among these components of biodiversity (r = -0.14, p = 0.42; Pearson correlation). The locations of the cells of low congruence varied according to spatial resolution. In univariate models, elevation was the variable that best explained species richness (R 2 = 0.77). No single variable explained the functional diversity; however, the models that included multiple environmental variables partially explained both the high and low functional diversity. The different patterns suggest that different historic, ecological and environmental processes could be responsible for the community structure of cricetid rodents in Oaxaca. These results indicate that one great challenge to be met to achieve more effective planning for biological conservation is to integrate knowledge regarding the spatial distribution of different dimensions of biodiversity.

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          Rebuilding community ecology from functional traits.

          There is considerable debate about whether community ecology will ever produce general principles. We suggest here that this can be achieved but that community ecology has lost its way by focusing on pairwise species interactions independent of the environment. We assert that community ecology should return to an emphasis on four themes that are tied together by a two-step process: how the fundamental niche is governed by functional traits within the context of abiotic environmental gradients; and how the interaction between traits and fundamental niches maps onto the realized niche in the context of a biotic interaction milieu. We suggest this approach can create a more quantitative and predictive science that can more readily address issues of global change.
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            New multidimensional functional diversity indices for a multifaceted framework in functional ecology.

            Functional diversity is increasingly identified as an important driver of ecosystem functioning. Various indices have been proposed to measure the functional diversity of a community, but there is still no consensus on which are most suitable. Indeed, none of the existing indices meets all the criteria required for general use. The main criteria are that they must be designed to deal with several traits, take into account abundances, and measure all the facets of functional diversity. Here we propose three indices to quantify each facet of functional diversity for a community with species distributed in a multidimensional functional space: functional richness (volume of the functional space occupied by the community), functional evenness (regularity of the distribution of abundance in this volume), and functional divergence (divergence in the distribution of abundance in this volume). Functional richness is estimated using the existing convex hull volume index. The new functional evenness index is based on the minimum spanning tree which links all the species in the multidimensional functional space. Then this new index quantifies the regularity with which species abundances are distributed along the spanning tree. Functional divergence is measured using a novel index which quantifies how species diverge in their distances (weighted by their abundance) from the center of gravity in the functional space. We show that none of the indices meets all the criteria required for a functional diversity index, but instead we show that the set of three complementary indices meets these criteria. Through simulations of artificial data sets, we demonstrate that functional divergence and functional evenness are independent of species richness and that the three functional diversity indices are independent of each other. Overall, our study suggests that decomposition of functional diversity into its three primary components provides a meaningful framework for its quantification and for the classification of existing functional diversity indices. This decomposition has the potential to shed light on the role of biodiversity on ecosystem functioning and on the influence of biotic and abiotic filters on the structure of species communities. Finally, we propose a general framework for applying these three functional diversity indices.
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              Functional diversity: back to basics and looking forward.

              Functional diversity is a component of biodiversity that generally concerns the range of things that organisms do in communities and ecosystems. Here, we review how functional diversity can explain and predict the impact of organisms on ecosystems and thereby provide a mechanistic link between the two. Critical points in developing predictive measures of functional diversity are the choice of functional traits with which organisms are distinguished, how the diversity of that trait information is summarized into a measure of functional diversity, and that the measures of functional diversity are validated through quantitative analyses and experimental tests. There is a vast amount of trait information available for plant species and a substantial amount for animals. Choosing which traits to include in a particular measure of functional diversity will depend on the specific aims of a particular study. Quantitative methods for choosing traits and for assigning weighting to traits are being developed, but need much more work before we can be confident about trait choice. The number of ways of measuring functional diversity is growing rapidly. We divide them into four main groups. The first, the number of functional groups or types, has significant problems and researchers are more frequently using measures that do not require species to be grouped. Of these, some measure diversity by summarizing distances between species in trait space, some by estimating the size of the dendrogram required to describe the difference, and some include information about species' abundances. We show some new and important differences between these, as well as what they indicate about the responses of assemblages to loss of individuals. There is good experimental and analytical evidence that functional diversity can provide a link between organisms and ecosystems but greater validation of measures is required. We suggest that non-significant results have a range of alternate explanations that do not necessarily contradict positive effects of functional diversity. Finally, we suggest areas for development of techniques used to measure functional diversity, highlight some exciting questions that are being addressed using ideas about functional diversity, and suggest some directions for novel research.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: SupervisionRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: MethodologyRole: SupervisionRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: MethodologyRole: SupervisionRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                7 June 2019
                2019
                : 14
                : 6
                : e0217154
                Affiliations
                [1 ] Centro de Investigaciones Biológicas, Instituto de Ciencias Básicas e Ingeniería, Universidad Autónoma del Estado de Hidalgo, Mineral de la Reforma, Hidalgo, México
                [2 ] Centro Interdisciplinario de Investigación para el Desarrollo Integral Regional, Unidad Oaxaca, Instituto Politécnico Nacional, Santa Cruz Xoxocotlán, Oaxaca, México
                University of Sydney, AUSTRALIA
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-9584-2619
                Article
                PONE-D-18-33500
                10.1371/journal.pone.0217154
                6555520
                31173585
                22b678ab-29b8-4c45-a8bf-67f454be8a1d
                © 2019 Martín-Regalado et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 21 November 2018
                : 6 May 2019
                Page count
                Figures: 3, Tables: 3, Pages: 20
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100003141, Consejo Nacional de Ciencia y Tecnología;
                Award ID: 622396
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100003141, Consejo Nacional de Ciencia y Tecnología;
                Award ID: 222632
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100003069, Instituto Politécnico Nacional;
                Award ID: 20180158
                Award Recipient :
                CNM-R thanks the scholarship (622396) granted by CONACYT to pursue her Ph.D in Biodiversity and Conservation at the UAEH, and the scholarship to visit the IADIZA in Argentina. Manuscript preparation was supported by the SEP-CONACYT Basic Science project #222632 and the IPN (SIP; 20180158). MB-S thanks the COFAA and the EDI of the IPN for their support, as well as the SNI for its recognition and support. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Ecology
                Ecological Metrics
                Species Diversity
                Ecology and Environmental Sciences
                Ecology
                Ecological Metrics
                Species Diversity
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Vertebrates
                Amniotes
                Mammals
                Rodents
                Biology and Life Sciences
                Biogeography
                Phylogeography
                Ecology and Environmental Sciences
                Biogeography
                Phylogeography
                Earth Sciences
                Geography
                Biogeography
                Phylogeography
                Biology and Life Sciences
                Evolutionary Biology
                Population Genetics
                Phylogeography
                Biology and Life Sciences
                Genetics
                Population Genetics
                Phylogeography
                Biology and Life Sciences
                Population Biology
                Population Genetics
                Phylogeography
                Biology and Life Sciences
                Ecology
                Biodiversity
                Ecology and Environmental Sciences
                Ecology
                Biodiversity
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Vertebrates
                Amniotes
                Mammals
                Biology and Life Sciences
                Conservation Biology
                Conservation Genetics
                Ecology and Environmental Sciences
                Conservation Science
                Conservation Biology
                Conservation Genetics
                Biology and Life Sciences
                Genetics
                Conservation Genetics
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Vertebrates
                Amniotes
                Mammals
                Rodents
                Peromyscus
                Ecology and Environmental Sciences
                Conservation Science
                Custom metadata
                The data underlying the results presented in the study are available from the Mammal Collection of the Centro Interdisciplinario de Investigación para el Desarrollo Integral Regional, Unidad Oaxaca (OAX.MA, CIIDIR-Oaxaca, IPN; https://www.ciidiroaxaca.ipn.mx/mastozoologia/) and the Global Biodiversity Information Facility ( https://www.gbif.org). In the page of OAX.MA, in the section “Representación taxonómica y geográfica”, there is a systematic list of terrestrial mammals deposited in the collection, and to request information about the specimens it is necessary to send an email to the curator ( mbriones@ 123456ipn.mx ; coleccionmamiferos_ciidiroax@ 123456ipn.mx ). In the page of GBIF, it is necessary to search the species, and then in the section of occurrences it is possible to download the records. The authors did not not have any special access privileges that others would not have in order to access the data used in our study.

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