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      Characterization of the dominant strain (G-VII) of Newcastle disease viruses isolated from commercial chickens in Bangladesh during recent outbreaks

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          Abstract

          Objective:

          Newcastle disease virus genotype VII (NDV-GVII), an extremely infectious pathogen, has been causing severe economic consequences for the chicken industry. The current study aimed to isolate and characterize NDV-GVII from commercial chickens in Bangladesh during a recent outbreak.

          Materials and Methods:

          From clinically suspected chickens from 70 commercial poultry farms, a total of 420 samples (trachea, lungs, and brain tissue) were collected. The samples were cultivated in 9–10 day-old seronegative embryonated chicken eggs (ECEs) after evaluating them using the rapid Newcastle disease virus (NDV) antigen detection kit. The hemagglutination (HA) inhibition test, agar gel immune diffusion (AGID) test, molecular detection by reverse transcription-polymerase chain reaction (RT-PCR), and phylogenetic studies using gene sequences of fusion (F) protein. The HA pattern of isolated NDV was determined using different avian and mammalian red blood cells (RBCs). The pathogenicity of the isolated virus was evaluated using mean death time (MDT), intravenous pathogenicity index (IVPI), and intracerebral pathogenicity index (ICPI).

          Results:

          The study found 87 NDV samples positive using the rapid NDV Ag detection kit and then 60 positives for virus isolation in ECEs. All 60 isolates were positive for NDV by HI, AGID, and RT-PCR. Phylogenetic tree analysis indicated that recent NDV isolates belong to genotype VII and exhibit a similarity of 99.7%–98.5% with isolates from Bangladesh, Iran, and India. The new isolates, identified as velogenic strains of NDV, possess an F protein cleavage site with 112-R-T-K-R-F- 117 amino acid motifs. The isolated NDV showed diversified HA activity while using RBCs from birds and mammals. The results of ICPI, IVPI, and MDT indicated that the recent NDV isolates were very virulent.

          Conclusion:

          This study concluded that NDV-GVII is prevalent in commercial poultry farms in Bangladesh.

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          Most cited references42

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          MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

          We announce the release of an advanced version of the Molecular Evolutionary Genetics Analysis (MEGA) software, which currently contains facilities for building sequence alignments, inferring phylogenetic histories, and conducting molecular evolutionary analysis. In version 6.0, MEGA now enables the inference of timetrees, as it implements the RelTime method for estimating divergence times for all branching points in a phylogeny. A new Timetree Wizard in MEGA6 facilitates this timetree inference by providing a graphical user interface (GUI) to specify the phylogeny and calibration constraints step-by-step. This version also contains enhanced algorithms to search for the optimal trees under evolutionary criteria and implements a more advanced memory management that can double the size of sequence data sets to which MEGA can be applied. Both GUI and command-line versions of MEGA6 can be downloaded from www.megasoftware.net free of charge.
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            The neighbor-joining method: a new method for reconstructing phylogenetic trees.

            N Saitou, M Nei (1987)
            A new method called the neighbor-joining method is proposed for reconstructing phylogenetic trees from evolutionary distance data. The principle of this method is to find pairs of operational taxonomic units (OTUs [= neighbors]) that minimize the total branch length at each stage of clustering of OTUs starting with a starlike tree. The branch lengths as well as the topology of a parsimonious tree can quickly be obtained by using this method. Using computer simulation, we studied the efficiency of this method in obtaining the correct unrooted tree in comparison with that of five other tree-making methods: the unweighted pair group method of analysis, Farris's method, Sattath and Tversky's method, Li's method, and Tateno et al.'s modified Farris method. The new, neighbor-joining method and Sattath and Tversky's method are shown to be generally better than the other methods.
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              Confidence Limits on Phylogenies: An Approach Using the Bootstrap

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                Author and article information

                Journal
                J Adv Vet Anim Res
                J Adv Vet Anim Res
                JAVAR
                Journal of Advanced Veterinary and Animal Research
                A periodical of the Network for the Veterinarians of Bangladesh (BDvetNET) (Bangladesh )
                2311-7710
                June 2024
                09 June 2024
                : 11
                : 2
                : 408-417
                Affiliations
                [1 ]Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh, Bangladesh
                [2 ]Central Disease Investigation Laboratory, Department of Livestock Services, Dhaka, Bangladesh
                [3 ]Department of Microbiology, Sheikh Hasina University of Science and Technology, Bhairab, Bangladesh
                [4 ]Livestock Research Institute, Mohakhali, Dhaka, Bangladesh
                Author notes
                Correspondence: Md. Alimul Islam alimul.vmh@ 123456bau.edu.bd Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh, Bangladesh.
                Author information
                https://orcid.org/0000-0002-9293-9642
                https://orcid.org/0000-0002-9293-9642
                https://orcid.org/0000-0002-9293-9642
                https://orcid.org/0000-0002-9293-9642
                https://orcid.org/0000-0002-9293-9642
                https://orcid.org/0000-0002-9293-9642
                https://orcid.org/0000-0002-9293-9642
                https://orcid.org/0000-0002-9293-9642
                https://orcid.org/0000-0002-9293-9642
                https://orcid.org/0000-0002-9293-9642
                https://orcid.org/0000-0002-9293-9642
                https://orcid.org/0000-0002-9293-9642
                https://orcid.org/0000-0002-9293-9642
                Article
                10.5455/javar.2024.k790
                11296175
                21d49929-f230-4b96-b89a-77cdc4ebac8f
                © The authors

                This is an Open Access article distributed under the terms of the Creative Commons Attribution 4.0 License ( http://creativecommons.org/licenses/by/4.0)

                History
                : 13 March 2024
                : 26 April 2024
                : 08 May 2024
                Categories
                Original Article

                ndv,rt-pcr,icpi,ivpi,mdt genotype vii
                ndv, rt-pcr, icpi, ivpi, mdt genotype vii

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