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      Heterotypic electrostatic interactions control complex phase separation of tau and prion into multiphasic condensates and co-aggregates

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          Significance

          Biological phase separation stands at the crossroads between physiology and disease. Proteins and nucleic acids undergo intracellular phase separation to form dynamic, liquid-like, multicomponent, membraneless compartments that offer spatiotemporal control of cellular functions. However, aberrant phase transitions are associated with deadly human diseases. Here we show that two neuronal proteins, namely tau and prion proteins, can commingle into multicomponent liquid-like condensates via electrostatic crosslinks. Properties of these complex condensates can be modulated by RNA leading to a diverse range of morphologies. We also demonstrate that liquid-like condensates of tau and prion can gradually convert into solid-like amyloid species reminiscent of pathological aggregates. Our findings provide unique mechanistic insights into multicomponent macromolecular phase separation associated with physiology and overlapping neuropathological features.

          Abstract

          Biomolecular condensates formed via phase separation of proteins and nucleic acids are thought to perform a wide range of critical cellular functions by maintaining spatiotemporal regulation and organizing intracellular biochemistry. However, aberrant phase transitions are implicated in a multitude of human diseases. Here, we demonstrate that two neuronal proteins, namely tau and prion, undergo complex coacervation driven by domain-specific electrostatic interactions to yield highly dynamic, mesoscopic liquid-like droplets. The acidic N-terminal segment of tau interacts electrostatically with the polybasic N-terminal intrinsically disordered segment of the prion protein (PrP). We employed a unique combination of time-resolved tools that encompass several orders of magnitude of timescales ranging from nanoseconds to seconds. These studies unveil an intriguing symphony of molecular events associated with the formation of heterotypic condensates comprising ephemeral, domain-specific, short-range electrostatic nanoclusters. Our results reveal that these heterotypic condensates can be tuned by RNA in a stoichiometry-dependent manner resulting in reversible, multiphasic, immiscible, and ternary condensates of different morphologies ranging from core-shell to nested droplets. This ternary system exhibits a typical three-regime phase behavior reminiscent of other membraneless organelles including nucleolar condensates. We also show that upon aging, tau:PrP droplets gradually convert into solid-like co-assemblies by sequestration of persistent intermolecular interactions. Our vibrational Raman results in conjunction with atomic force microscopy and multi-color fluorescence imaging reveal the presence of amorphous and amyloid-like co-aggregates upon maturation. Our findings provide mechanistic underpinnings of overlapping neuropathology involving tau and PrP and highlight a broader biological role of complex phase transitions in physiology and disease.

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          Most cited references93

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          Biomolecular condensates: organizers of cellular biochemistry

          In addition to membrane-bound organelles, eukaryotic cells feature various membraneless compartments, including the centrosome, the nucleolus and various granules. Many of these compartments form through liquid–liquid phase separation, and the principles, mechanisms and regulation of their assembly as well as their cellular functions are now beginning to emerge.
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            Liquid phase condensation in cell physiology and disease.

            Phase transitions are ubiquitous in nonliving matter, and recent discoveries have shown that they also play a key role within living cells. Intracellular liquid-liquid phase separation is thought to drive the formation of condensed liquid-like droplets of protein, RNA, and other biomolecules, which form in the absence of a delimiting membrane. Recent studies have elucidated many aspects of the molecular interactions underlying the formation of these remarkable and ubiquitous droplets and the way in which such interactions dictate their material properties, composition, and phase behavior. Here, we review these exciting developments and highlight key remaining challenges, particularly the ability of liquid condensates to both facilitate and respond to biological function and how their metastability may underlie devastating protein aggregation diseases.
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              A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins

              Proteins such as FUS phase separate to form liquid-like condensates that can harden into less dynamic structures. However, how these properties emerge from the collective interactions of many amino acids remains largely unknown. Here, we use extensive mutagenesis to identify a sequence-encoded molecular grammar underlying the driving forces of phase separation of proteins in the FUS family and test aspects of this grammar in cells. Phase separation is primarily governed by multivalent interactions among tyrosine residues from prion-like domains and arginine residues from RNA-binding domains, which are modulated by negatively charged residues. Glycine residues enhance the fluidity, whereas glutamine and serine residues promote hardening. We develop a model to show that the measured saturation concentrations of phase separation are inversely proportional to the product of the numbers of arginine and tyrosine residues. These results suggest it is possible to predict phase-separation properties based on amino acid sequences.
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                Author and article information

                Contributors
                Journal
                Proc Natl Acad Sci U S A
                Proc Natl Acad Sci U S A
                PNAS
                Proceedings of the National Academy of Sciences of the United States of America
                National Academy of Sciences
                0027-8424
                1091-6490
                3 January 2023
                10 January 2023
                3 July 2023
                : 120
                : 2
                : e2216338120
                Affiliations
                [1] aCentre for Protein Science, Design and Engineering, Indian Institute of Science Education and Research Mohali , Mohali, Punjab 140306, India
                [2] bDepartment of Chemical Sciences, Indian Institute of Science Education and Research Mohali , Mohali, Punjab 140306, India
                [3] cDepartment of Biological Sciences, Indian Institute of Science Education and Research Mohali , Mohali, Punjab 140306, India
                Author notes
                1To whom correspondence may be addressed. Email: mukhopadhyay@ 123456iisermohali.ac.in .

                Edited by H. Jane Dyson, Scripps Research Institute Department of Integrative Structural and Computational Biology, La Jolla, CA; received September 24, 2022; accepted November 22, 2022

                Author information
                https://orcid.org/0000-0003-1242-9958
                Article
                202216338
                10.1073/pnas.2216338120
                9986828
                36595668
                20aaa76c-5dbd-4a3d-a7c5-cc8216ca7c62
                Copyright © 2023 the Author(s). Published by PNAS.

                This article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND).

                History
                : 24 September 2022
                : 22 November 2022
                Page count
                Pages: 12, Words: 7389
                Funding
                Funded by: DST | Science and Engineering Research Board (SERB), FundRef 501100001843;
                Award ID: SPR/2020/000333
                Award Recipient : Samrat Mukhopadhyay
                Funded by: DST | Science and Engineering Research Board (SERB), FundRef 501100001843;
                Award ID: CRG/2021/002314
                Award Recipient : Samrat Mukhopadhyay
                Funded by: Department of Science and Technology, Ministry of Science and Technology, India (DST), FundRef 501100001409;
                Award ID: SR/FST/LS-II/ 2017/97
                Award Recipient : Samrat Mukhopadhyay
                Funded by: Ministry of Education, India (MoE), FundRef 501100004541;
                Award ID: Centre of Excellence
                Award Recipient : Samrat Mukhopadhyay
                Funded by: Council of Scientific and Industrial Research, India (CSIR), FundRef 501100001412;
                Award ID: Fellowship
                Award Recipient : Sandeep K. Rai
                Categories
                video, Video
                research-article, Research Article
                biophys-bio, Biophysics and Computational Biology
                408
                Biological Sciences
                Biophysics and Computational Biology

                biological phase transitions,complex coacervation,intrinsically disordered proteins,membraneless organelles,protein aggregation

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