7
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: not found

      Ethylene glycol revisited: Molecular dynamics simulations and visualization of the liquid and its hydrogen-bond network

      research-article

      Read this article at

      ScienceOpenPublisherPMC
      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Molecular dynamics simulations of liquid ethylene glycol described by the OPLS-AA force field were performed to gain insight into its hydrogen-bond structure. We use the population correlation function as a statistical measure for the hydrogen-bond lifetime. In an attempt to understand the complicated hydrogen-bonding, we developed new molecular visualization tools within the Vish Visualization shell and used it to visualize the life of each individual hydrogen-bond. With this tool hydrogen-bond formation and breaking as well as clustering and chain formation in hydrogen-bonded liquids can be observed directly. Liquid ethylene glycol at room temperature does not show significant clustering or chain building. The hydrogen-bonds break often due to the rotational and vibrational motions of the molecules leading to an H-bond half-life time of approximately 1.5 ps. However, most of the H-bonds are reformed again so that after 50 ps only 40% of these H-bonds are irreversibly broken due to diffusional motion. This hydrogen-bond half-life time due to diffusional motion is 80.3 ps. The work was preceded by a careful check of various OPLS-based force fields used in the literature. It was found that they lead to quite different angular and H-bond distributions.

          Graphical abstract

          Highlights

          • We simulated liquid ethylene glycol classically.

          • Four OPLS-AA based force fields were compared.

          • Hydrogen bonds were identified by geometrical criteria.

          • Lifetimes of hydrogen bonds were obtained using the population correlation formalism.

          • A visualization of individual hydrogen-bond lifetimes was implemented and clustering of hydrogen bonds was observed.

          Related collections

          Most cited references33

          • Record: found
          • Abstract: found
          • Article: not found

          A molecular jump mechanism of water reorientation.

          Despite long study, a molecular picture of the mechanism of water reorientation is still lacking. Using numerical simulations, we find support for a pathway in which the rotating water molecule breaks a hydrogen bond (H-bond) with an overcoordinated first-shell neighbor to form an H-bond with an undercoordinated second-shell neighbor. The H-bond cleavage and the molecular reorientation occur concertedly and not successively as usually considered. This water reorientation mechanism involves large-amplitude angular jumps, rather than the commonly accepted sequence of small diffusive steps, and therefore calls for reinterpretation of many experimental data wherein water rotational relaxation is assumed to be diffusive.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Effects of ion atmosphere on hydrogen-bond dynamics in aqueous electrolyte solutions

            Chandra (2000)
            We have performed a series of molecular dynamics simulations of aqueous NaCl and KCl solutions at different concentrations to investigate the effects of ion atmosphere on the dynamics of water-water hydrogen bonds at room temperature. The average number of hydrogen bonds per water molecule decreases with increase of ion concentration. The dynamics of hydrogen-bond breaking is found to accelerate somewhat and that of hydrogen-bond structural relaxation, which occurs at a longer time scale, is found to slow down with increasing ion concentration for both NaCl and KCl solutions.
              Bookmark
              • Record: found
              • Abstract: not found
              • Article: not found

              Methane and carbon dioxide adsorption in clay-like slit pores by Monte Carlo simulations

                Bookmark

                Author and article information

                Contributors
                Journal
                J Mol Liq
                J Mol Liq
                Journal of Molecular Liquids
                Elsevier
                0167-7322
                1873-3166
                1 January 2014
                January 2014
                : 189
                : 100
                : 20-29
                Affiliations
                [a ]Institute for Ion-Physics and Applied Physics, University of Innsbruck, 6020, Technikerstraße 25/3, Austria
                [b ]Institute Ion-Plasma and Laser Technology of Uzbekistan Academy Sciences, Uzbekistan
                [c ]Institute for Mathematics, University of Innsbruck, 6020, Technikerstraße 25/3, Austria
                [d ]Institute for Basic Sciences in Engineering Science, University of Innsbruck, 6020, Technikerstraße 13, Austria
                [e ]Institute for Computer Science, University of Innsbruck, 6020, Technikerstraße 25/3, Austria
                [f ]Center for Computation and Technology, Louisiana State University, 211 Johnston Hall, Baton Rouge, LA 70803, United States
                [g ]Kazan National Research Technological University, 420015 Kazan, Republic of Tatarstan, Russian Federation
                Author notes
                Article
                S0167-7322(13)00206-7
                10.1016/j.molliq.2013.05.033
                3990454
                24748697
                1f4bd2f3-5d2d-4334-bfa7-8cd0a094a5d9
                © 2013 The Authors

                This document may be redistributed and reused, subject to certain conditions.

                History
                Categories
                Article

                ethylene glycol,molecular dynamics,opls-aa force fields,hydrogen-bonds,visualization

                Comments

                Comment on this article