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      Regulation and Evolution of NLR Genes: A Close Interconnection for Plant Immunity

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          Abstract

          NLR (NOD-like receptor) genes belong to one of the largest gene families in plants. Their role in plants’ resistance to pathogens has been clearly described for many members of this gene family, and dysregulation or overexpression of some of these genes has been shown to induce an autoimmunity state that strongly affects plant growth and yield. For this reason, these genes have to be tightly regulated in their expression and activity, and several regulatory mechanisms are described here that tune their gene expression and protein levels. This gene family is subjected to rapid evolution, and to maintain diversity at NLRs, a plethora of genetic mechanisms have been identified as sources of variation. Interestingly, regulation of gene expression and evolution of this gene family are two strictly interconnected aspects. Indeed, some examples have been reported in which mechanisms of gene expression regulation have roles in promotion of the evolution of this gene family. Moreover, co-evolution of the NLR gene family and other gene families devoted to their control has been recently demonstrated, as in the case of miRNAs.

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          Most cited references176

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          Pivoting the plant immune system from dissection to deployment.

          Diverse and rapidly evolving pathogens cause plant diseases and epidemics that threaten crop yield and food security around the world. Research over the last 25 years has led to an increasingly clear conceptual understanding of the molecular components of the plant immune system. Combined with ever-cheaper DNA-sequencing technology and the rich diversity of germ plasm manipulated for over a century by plant breeders, we now have the means to begin development of durable (long-lasting) disease resistance beyond the limits imposed by conventional breeding and in a manner that will replace costly and unsustainable chemical controls.
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            Estimating the timing of early eukaryotic diversification with multigene molecular clocks.

            Although macroscopic plants, animals, and fungi are the most familiar eukaryotes, the bulk of eukaryotic diversity is microbial. Elucidating the timing of diversification among the more than 70 lineages is key to understanding the evolution of eukaryotes. Here, we use taxon-rich multigene data combined with diverse fossils and a relaxed molecular clock framework to estimate the timing of the last common ancestor of extant eukaryotes and the divergence of major clades. Overall, these analyses suggest that the last common ancestor lived between 1866 and 1679 Ma, consistent with the earliest microfossils interpreted with confidence as eukaryotic. During this interval, the Earth's surface differed markedly from today; for example, the oceans were incompletely ventilated, with ferruginous and, after about 1800 Ma, sulfidic water masses commonly lying beneath moderately oxygenated surface waters. Our time estimates also indicate that the major clades of eukaryotes diverged before 1000 Ma, with most or all probably diverging before 1200 Ma. Fossils, however, suggest that diversity within major extant clades expanded later, beginning about 800 Ma, when the oceans began their transition to a more modern chemical state. In combination, paleontological and molecular approaches indicate that long stems preceded diversification in the major eukaryotic lineages.
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              High-efficiency TALEN-based gene editing produces disease-resistant rice.

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                Author and article information

                Journal
                Int J Mol Sci
                Int J Mol Sci
                ijms
                International Journal of Molecular Sciences
                MDPI
                1422-0067
                05 June 2018
                June 2018
                : 19
                : 6
                : 1662
                Affiliations
                [1 ]Council for Agricultural Research and Economics—Research Centre for Cereal and Industrial Crops, s.s. 673, km 25.2, 71122 Foggia, Italy; graziamaria.borrelli@ 123456crea.gov.it (G.M.B.); daniela.marone@ 123456crea.gov.it (D.M.)
                [2 ]Council for Agricultural Research and Economics—Research Centre for Genomics and Bioinformatics, via San Protaso 302, 29017 Fiorenzuola d’Arda (PC), Italy; elisabetta.mazzucotelli@ 123456crea.gov.it (E.M.); cristina.crosatti@ 123456crea.gov.it (C.C.); vania.michelotti@ 123456crea.gov.it (V.M.)
                [3 ]Council for Agricultural Research and Economics—Research Centre for Cereal and Industrial Crops, s.s. 11 to Torino, km 2.5, 13100 Vercelli, Italy; giampiero.vale@ 123456crea.gov.it
                [4 ]Council for Agricultural Research and Economics—Research Centre for Cereal and Industrial Crops, via Stezzano 24, 24126 Bergamo, Italy
                Author notes
                [* ]Correspondence: annamaria.mastrangelo@ 123456crea.gov.it ; Tel.: +39-035-313-132
                [†]

                These authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0003-1270-3590
                https://orcid.org/0000-0002-3618-0301
                Article
                ijms-19-01662
                10.3390/ijms19061662
                6032283
                29867062
                1e5c4c5d-5b9e-4aad-9ae8-d050f4a8a955
                © 2018 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 04 May 2018
                : 02 June 2018
                Categories
                Review

                Molecular biology
                nlr genes,gene regulation,gene evolution,plant breeding
                Molecular biology
                nlr genes, gene regulation, gene evolution, plant breeding

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