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      IL-9-triggered lncRNA Gm13568 regulates Notch1 in astrocytes through interaction with CBP/P300: contribute to the pathogenesis of experimental autoimmune encephalomyelitis

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          Abstract

          Background

          Interleukin 9 (IL-9), produced mainly by T helper 9 (Th9) cells, has been recognized as an important regulator in multiple sclerosis (MS) and its animal model, experimental autoimmune encephalomyelitis (EAE). Astrocytes respond to IL-9 and reactive astrocytes always associate with blood-brain barrier damage, immune cell infiltration, and spinal injury in MS and EAE. Several long non-coding RNAs (lncRNAs) with aberrant expression have been identified in the pathogenesis of MS. Here, we examined the effects of lncRNA Gm13568 (a co-upregulated lncRNA both in EAE mice and in mouse primary astrocytes activated by IL-9) on the activation of astrocytes and the process of EAE.

          Methods

          In vitro, shRNA-recombinant lentivirus with glial fibrillary acidic protein (GFAP) promoter were performed to determine the relative gene expression and proinflammatory cytokines production in IL-9 treated-astrocytes using Western blot, real-time PCR, and Cytometric Bead Array, respectively. RIP and ChIP assays were analyzed for the mechanism of lncRNA Gm13568 regulating gene expression. Immunofluorescence assays was performed to measure the protein expression in astrocytes. In vivo, H&E staining and LFB staining were applied to detect the inflammatory cells infiltrations and the medullary sheath damage in spinal cords of EAE mice infected by the recombinant lentivirus. Results were analyzed by one-way ANOVA or Student’s t test, as appropriate.

          Results

          Knockdown of the endogenous lncRNA Gm13568 remarkably inhibits the Notch1 expression, astrocytosis, and the phosphorylation of signal transducer and activator of transcription 3 (p-STAT3) as well as the production of inflammatory cytokines and chemokines (IL-6, TNF-α, IP-10) in IL-9-activated astrocytes, in which Gm13568 associates with the transcriptional co-activators CBP/P300 which are enriched in the promoter of Notch1 genes. More importantly, inhibiting Gm13568 with lentiviral vector in astrocytes ameliorates significantly inflammation and demyelination in EAE mice, therefore delaying the EAE process.

          Conclusions

          These findings uncover that Gm13568 regulates the production of inflammatory cytokines in active astrocytes and affects the pathogenesis of EAE through the Notch1/STAT3 pathway. LncRNA Gm13568 may be a promising target for treating MS and demyelinating diseases.

          Supplementary Information

          The online version contains supplementary material available at 10.1186/s12974-021-02156-5.

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          Most cited references41

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          Functional Classification and Experimental Dissection of Long Noncoding RNAs

          Over the last decade, it has been increasingly demonstrated that the genomes of many species are pervasively transcribed, resulting in the production of numerous long noncoding RNAs (lncRNAs). At the same time, it is now appreciated that many types of DNA regulatory elements, such as enhancers and promoters, regularly initiate bidirectional transcription. Thus, discerning functional noncoding transcripts from a vast transcriptome is a paramount priority, and challenge, for the lncRNA field. In this review, we aim to provide a conceptual and experimental framework for classifying and elucidating lncRNA function. We categorize lncRNA loci into those that regulate gene expression in cis versus those that perform functions in trans , and propose an experimental approach to dissect lncRNA activity based on these classifications. These strategies to further understand lncRNAs promise to reveal new and unanticipated biology, with great potential to advance our understanding of normal physiology and disease.
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            Distinct roles of GCN5/PCAF-mediated H3K9ac and CBP/p300-mediated H3K18/27ac in nuclear receptor transactivation.

            Histone acetyltransferases (HATs) GCN5 and PCAF (GCN5/PCAF) and CBP and p300 (CBP/p300) are transcription co-activators. However, how these two distinct families of HATs regulate gene activation remains unclear. Here, we show deletion of GCN5/PCAF in cells specifically and dramatically reduces acetylation on histone H3K9 (H3K9ac) while deletion of CBP/p300 specifically and dramatically reduces acetylations on H3K18 and H3K27 (H3K18/27ac). A ligand for nuclear receptor (NR) PPARδ induces sequential enrichment of H3K18/27ac, RNA polymerase II (Pol II) and H3K9ac on PPARδ target gene Angptl4 promoter, which correlates with a robust Angptl4 expression. Inhibiting transcription elongation blocks ligand-induced H3K9ac, but not H3K18/27ac, on the Angptl4 promoter. Finally, we show GCN5/PCAF and GCN5/PCAF-mediated H3K9ac correlate with, but are surprisingly dispensable for, NR target gene activation. In contrast, CBP/p300 and their HAT activities are essential for ligand-induced Pol II recruitment on, and activation of, NR target genes. These results highlight the substrate and site specificities of HATs in cells, demonstrate the distinct roles of GCN5/PCAF- and CBP/p300-mediated histone acetylations in gene activation, and suggest an important role of CBP/p300-mediated H3K18/27ac in NR-dependent transcription.
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              Multiple Sclerosis: Mechanisms and Immunotherapy

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                Author and article information

                Contributors
                lxmlxm_hi@xzhmu.edu.cn
                gds@xzhmu.edu.cn
                Journal
                J Neuroinflammation
                J Neuroinflammation
                Journal of Neuroinflammation
                BioMed Central (London )
                1742-2094
                11 May 2021
                11 May 2021
                2021
                : 18
                : 108
                Affiliations
                [1 ]GRID grid.417303.2, ISNI 0000 0000 9927 0537, Jiangsu Key Laboratory of Immunity and Metabolism, Department of Pathogen Biology and Immunology and Laboratory of Infection and Immunity, , Xuzhou Medical University, ; 209 Tongshan Road, Xuzhou, Jiangsu 221004 People’s Republic of China
                [2 ]GRID grid.410745.3, ISNI 0000 0004 1765 1045, Neurology Department, , The Affiliated Xuzhou Center Hospital of Nanjing University of Chinese Medicine, ; Xuzhou, People’s Republic of China
                [3 ]GRID grid.452207.6, ISNI 0000 0004 1758 0558, Neurology Department, , Xuzhou Central Hospital, ; Xuzhou, People’s Republic of China
                [4 ]GRID grid.417303.2, ISNI 0000 0000 9927 0537, Neurology Department, , Xuzhou Clinical School of Xuzhou Medical University, ; Xuzhou, Jiangsu 221009 People’s Republic of China
                [5 ]GRID grid.413389.4, Department of Neurology, , Second Affiliated Hospital of Xuzhou Medical University, ; Xuzhou, Jiangsu 221006 People’s Republic of China
                [6 ]GRID grid.214458.e, ISNI 0000000086837370, Department of Psychiatry, , University of Michigan Medicine, ; MI48109, Ann Arbor, Michigan USA
                [7 ]GRID grid.417303.2, ISNI 0000 0000 9927 0537, Department of Physiology, , Xuzhou Medical University, ; Xuzhou, Jiangsu 221004 People’s Republic of China
                [8 ]GRID grid.417303.2, ISNI 0000 0000 9927 0537, Xuzhou Key Laboratory of Neurobiology, Department of Neurobiology and Anatomy, , Xuzhou Medical University, ; Xuzhou, Jiangsu 221004 People’s Republic of China
                Author information
                http://orcid.org/0000-0003-0607-218X
                Article
                2156
                10.1186/s12974-021-02156-5
                8112022
                33971906
                1c81436a-b748-4435-bd38-5bf9f6ef81f6
                © The Author(s) 2021

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 16 February 2021
                : 22 April 2021
                Funding
                Funded by: the National Natural Science Foundation of China
                Award ID: 81971179
                Award ID: 82071304, 81671149
                Award Recipient :
                Funded by: the National Natural Science Foundation of China
                Award ID: 81702027
                Award ID: 81461138036
                Award Recipient :
                Funded by: the Natural Science Foundation of Jiangsu Province
                Award ID: BK20191463
                Award Recipient :
                Funded by: Jiangsu Commission of Health
                Award ID: Z2019035
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100007166, Jiangsu Provincial Department of Education;
                Award ID: 20KJA320004
                Award Recipient :
                Funded by: Xuzhou Medical Young Talents Project and Xuzhou Technology Bureau Foundation
                Award ID: KC17115, KC16SS081, KC19167
                Award Recipient :
                Categories
                Research
                Custom metadata
                © The Author(s) 2021

                Neurosciences
                il-9,astrocytes,lncrna gm13568,notch1,inflammatory cytokines,experimental autoimmune encephalomyelitis (eae)

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