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      Ethylene‐responsive factor ERF114 mediates fungal pathogen effector PevD1‐induced disease resistance in Arabidopsis thaliana

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          Abstract

          APETALA2/ethylene‐responsive factor (AP2/ERF) family transcription factors are well‐documented in plant responses to a wide range of biotic and abiotic stresses, but their roles in mediating elicitor‐induced disease resistance remains largely unexplored. PevD1 is a Verticillium dahliae secretory effector that can induce disease resistance in cotton and tobacco plants. In our previous work, Nicotiana benthamiana ERF114 ( NbERF114) was identified in a screen of genes differentially expressed in response to PevD1 infiltration. Here, we found that the ortholog of NbERF114 in Arabidopsis thaliana ( ERF114) also strongly responded to PevD1 treatment and transcripts were induced by Pseudomonas syringae pv. tomato (Pst) DC3000 infection. Loss of ERF114 function caused impaired disease resistance, while overexpressing ERF114 ( OE‐ERF114) enhanced resistance to Pst DC3000. Moreover, ERF114 mediated PevD1‐induced disease resistance. RNA‐sequencing analysis revealed that the transcript level of phenylalanine ammonia‐lyase1 ( PAL1) and its downstream genes were significantly suppressed in erf114 mutants compared with A. thaliana Col‐0. Reverse transcription‐quantitative PCR (RT‐qPCR) analysis further confirmed that the PAL1 mRNA level was significantly elevated in overexpressing OE‐ERF114 plants but reduced in erf114 mutants compared with Col‐0. Chromatin immunoprecipitation‐qPCR (ChIP‐qPCR) and electrophoretic mobility shift assay verified that ERF114 directly bound to the promoter of PAL1. The gene expression profiles of ERF114 and PAL1 in oestradiol‐inducible transgenic plants confirmed ERF114 could activate PAL1 transcriptional expression. Further investigation revealed that ERF114 positively modulated PevD1‐induced lignin and salicylic acid accumulation, probably by activating PAL1 transcription.

          Abstract

          Ethylene‐responsive factor ERF114 mediates Verticillium dahliae effector PevD1‐induced lignin and salicylic acid accumulation, probably by activating PAL1 transcription.

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          Trimmomatic: a flexible trimmer for Illumina sequence data

          Motivation: Although many next-generation sequencing (NGS) read preprocessing tools already existed, we could not find any tool or combination of tools that met our requirements in terms of flexibility, correct handling of paired-end data and high performance. We have developed Trimmomatic as a more flexible and efficient preprocessing tool, which could correctly handle paired-end data. Results: The value of NGS read preprocessing is demonstrated for both reference-based and reference-free tasks. Trimmomatic is shown to produce output that is at least competitive with, and in many cases superior to, that produced by other tools, in all scenarios tested. Availability and implementation: Trimmomatic is licensed under GPL V3. It is cross-platform (Java 1.5+ required) and available at http://www.usadellab.org/cms/index.php?page=trimmomatic Contact: usadel@bio1.rwth-aachen.de Supplementary information: Supplementary data are available at Bioinformatics online.
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            The plant immune system.

            Many plant-associated microbes are pathogens that impair plant growth and reproduction. Plants respond to infection using a two-branched innate immune system. The first branch recognizes and responds to molecules common to many classes of microbes, including non-pathogens. The second responds to pathogen virulence factors, either directly or through their effects on host targets. These plant immune systems, and the pathogen molecules to which they respond, provide extraordinary insights into molecular recognition, cell biology and evolution across biological kingdoms. A detailed understanding of plant immune function will underpin crop improvement for food, fibre and biofuels production.
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              Analyzing real-time PCR data by the comparative C(T) method.

              Two different methods of presenting quantitative gene expression exist: absolute and relative quantification. Absolute quantification calculates the copy number of the gene usually by relating the PCR signal to a standard curve. Relative gene expression presents the data of the gene of interest relative to some calibrator or internal control gene. A widely used method to present relative gene expression is the comparative C(T) method also referred to as the 2 (-DeltaDeltaC(T)) method. This protocol provides an overview of the comparative C(T) method for quantitative gene expression studies. Also presented here are various examples to present quantitative gene expression data using this method.
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                Author and article information

                Contributors
                yangxiufen@caas.cn
                Journal
                Mol Plant Pathol
                Mol Plant Pathol
                10.1111/(ISSN)1364-3703
                MPP
                Molecular Plant Pathology
                John Wiley and Sons Inc. (Hoboken )
                1464-6722
                1364-3703
                27 March 2022
                June 2022
                : 23
                : 6 , Novel insights into the role of complex subcellular bodies regulating host–pathogen interactions ( doiID: 10.1111/mpp.v23.6 )
                : 819-831
                Affiliations
                [ 1 ] State Key Laboratory for Biology of Plant Diseases and Insect Pests Institute of Plant Protection Chinese Academy of Agricultural Sciences Beijing China
                [ 2 ] Department of Biology School of Life Sciences Institute of Plant and Food Science Southern University of Science and Technology (SUSTech) Shenzhen China
                Author notes
                [*] [* ] Correspondence

                Xiufen Yang, State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.

                Email: yangxiufen@ 123456caas.cn

                Author information
                https://orcid.org/0000-0001-7315-245X
                https://orcid.org/0000-0002-9298-8014
                Article
                MPP13208
                10.1111/mpp.13208
                9104250
                35340106
                1c2bfb44-46f9-4257-8845-8a69ad2c341d
                © 2022 The Authors. Molecular Plant Pathology published by British Society for Plant Pathology and John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 24 February 2022
                : 10 October 2021
                : 02 March 2022
                Page count
                Figures: 7, Tables: 0, Pages: 13, Words: 8317
                Funding
                Funded by: National Natural Science Foundation of China , doi 10.13039/501100001809;
                Award ID: 31772151
                Categories
                Original Article
                Original Articles
                Custom metadata
                2.0
                June 2022
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.1.6 mode:remove_FC converted:13.05.2022

                Plant science & Botany
                disease resistance,erf114,pevd1,pst dc3000,verticillium dahliae
                Plant science & Botany
                disease resistance, erf114, pevd1, pst dc3000, verticillium dahliae

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