8
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Heparan sulfate glycomimetics via iterative assembly of “clickable” disaccharides†

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Heparan sulfate (HS) glycosaminoglycans are widely expressed on the mammalian cell surfaces and extracellular matrices and play important roles in a variety of cell functions. Studies on the structure–activity relationships of HS have long been hampered by the challenges in obtaining chemically defined HS structures with unique sulfation patterns. Here, we report a new approach to HS glycomimetics based on iterative assembly of clickable disaccharide building blocks that mimic the disaccharide repeating units of native HS. Variably sulfated clickable disaccharides were facilely assembled into a library of mass spec-sequenceable HS-mimetic oligomers with defined sulfation patterns by solution-phase iterative syntheses. Microarray and surface plasmon resonance (SPR) binding assays corroborated molecular dynamics (MD) simulations and confirmed that these HS-mimetic oligomers bind protein fibroblast growth factor 2 (FGF2) in a sulfation-dependent manner consistent with that of the native HS. This work established a general approach to HS glycomimetics that can potentially serve as alternatives to native HS in both fundamental research and disease models.

          Abstract

          Iterative assembly of variably sulfated clickable disaccharides facilely produced mass spec-sequencible heparan sulfate mimetics. These glycomimetic oligomers bind protein in a sulfation-dependent manner consistent with that of the native glycans.

          Related collections

          Most cited references52

          • Record: found
          • Abstract: found
          • Article: found
          Is Open Access

          Ultrastructural Characterization of the Lower Motor System in a Mouse Model of Krabbe Disease

          Krabbe disease (KD) is a neurodegenerative disorder caused by the lack of β- galactosylceramidase enzymatic activity and by widespread accumulation of the cytotoxic galactosyl-sphingosine in neuronal, myelinating and endothelial cells. Despite the wide use of Twitcher mice as experimental model for KD, the ultrastructure of this model is partial and mainly addressing peripheral nerves. More details are requested to elucidate the basis of the motor defects, which are the first to appear during KD onset. Here we use transmission electron microscopy (TEM) to focus on the alterations produced by KD in the lower motor system at postnatal day 15 (P15), a nearly asymptomatic stage, and in the juvenile P30 mouse. We find mild effects on motorneuron soma, severe ones on sciatic nerves and very severe effects on nerve terminals and neuromuscular junctions at P30, with peripheral damage being already detectable at P15. Finally, we find that the gastrocnemius muscle undergoes atrophy and structural changes that are independent of denervation at P15. Our data further characterize the ultrastructural analysis of the KD mouse model, and support recent theories of a dying-back mechanism for neuronal degeneration, which is independent of demyelination.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Development and testing of a general amber force field.

            We describe here a general Amber force field (GAFF) for organic molecules. GAFF is designed to be compatible with existing Amber force fields for proteins and nucleic acids, and has parameters for most organic and pharmaceutical molecules that are composed of H, C, N, O, S, P, and halogens. It uses a simple functional form and a limited number of atom types, but incorporates both empirical and heuristic models to estimate force constants and partial atomic charges. The performance of GAFF in test cases is encouraging. In test I, 74 crystallographic structures were compared to GAFF minimized structures, with a root-mean-square displacement of 0.26 A, which is comparable to that of the Tripos 5.2 force field (0.25 A) and better than those of MMFF 94 and CHARMm (0.47 and 0.44 A, respectively). In test II, gas phase minimizations were performed on 22 nucleic acid base pairs, and the minimized structures and intermolecular energies were compared to MP2/6-31G* results. The RMS of displacements and relative energies were 0.25 A and 1.2 kcal/mol, respectively. These data are comparable to results from Parm99/RESP (0.16 A and 1.18 kcal/mol, respectively), which were parameterized to these base pairs. Test III looked at the relative energies of 71 conformational pairs that were used in development of the Parm99 force field. The RMS error in relative energies (compared to experiment) is about 0.5 kcal/mol. GAFF can be applied to wide range of molecules in an automatic fashion, making it suitable for rational drug design and database searching. Copyright 2004 Wiley Periodicals, Inc.
              Bookmark
              • Record: found
              • Abstract: not found
              • Article: not found

              Click Chemistry: Diverse Chemical Function from a Few Good Reactions

                Bookmark

                Author and article information

                Journal
                Chem Sci
                Chem Sci
                SC
                CSHCBM
                Chemical Science
                The Royal Society of Chemistry
                2041-6520
                2041-6539
                28 February 2023
                29 March 2023
                28 February 2023
                : 14
                : 13
                : 3514-3522
                Affiliations
                [a ] Department of Chemistry, Boston College Chestnut Hill Massachusetts 02467 USA udayan.mohanty@ 123456bc.edu jia.niu@ 123456bc.edu
                [b ] Center for Biomedical Mass Spectrometry, Boston University School of Medicine Boston MA 02118 USA
                [c ] Department of Surgery, Beth Israel Deaconess Medical Center, Harvard Medical School Brookline Ave Boston MA 02215 USA
                [d ] Department of Chemistry, Faculty of Science, Chulalongkorn University Bangkok 10330 Thailand
                Author notes
                [‡]

                These authors have contributed equally to this work.

                Author information
                https://orcid.org/0000-0001-7076-4813
                https://orcid.org/0000-0002-5622-6362
                Article
                d3sc00260h
                10.1039/d3sc00260h
                10055906
                19074a37-ebee-436c-a4b0-fdd1d7d7d20c
                This journal is © The Royal Society of Chemistry
                History
                : 14 January 2023
                : 27 February 2023
                Page count
                Pages: 9
                Funding
                Funded by: National Science Foundation, doi 10.13039/100000001;
                Award ID: CHE-2117246
                Funded by: National Institutes of Health, doi 10.13039/100000002;
                Award ID: 1DP2HG011027-01
                Award ID: 1S10OD026910-01A1
                Award ID: R24GM137763
                Categories
                Chemistry
                Custom metadata
                Paginated Article

                Comments

                Comment on this article