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      Identification of potent and selective small molecule inhibitors of the cation channel TRPM4

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          Abstract

          Background and Purpose

          TRPM4 is a calcium‐activated non‐selective cation channel expressed in many tissues and implicated in several diseases, and has not yet been validated as a therapeutic target due to the lack of potent and selective inhibitors. We sought to discover a novel series of small‐molecule inhibitors by combining in silico methods and cell‐based screening assay, with sub‐micromolar potency and improved selectivity from previously reported TRPM4 inhibitors.

          Experimental Approach

          Here, we developed a high throughput screening compatible assay to record TRPM4‐mediated Na + influx in cells using a Na +‐sensitive dye and used this assay to screen a small set of compounds selected by ligand‐based virtual screening using previously known weakly active and non‐selective TRPM4 inhibitors as seed molecules. Conventional electrophysiological methods were used to validate the potency and selectivity of the hit compounds in HEK293 cells overexpressing TRPM4 and in endogenously expressing prostate cancer cell line LNCaP. Chemical chaperone property of compound 5 was studied using Western blots and electrophysiology experiments.

          Key Results

          A series of halogenated anthranilic amides were identified with TRPM4 inhibitory properties with sub‐micromolar potency and adequate selectivity. We also showed for the first time that a naturally occurring variant of TRPM4, which displays loss‐of‐expression and function, is rescued by the most promising compound 5 identified in this study.

          Conclusions and Implications

          The discovery of compound 5, a potent and selective inhibitor of TRPM4 with an additional chemical chaperone feature, revealed new opportunities for studying the role of TRPM4 in human diseases and developing clinical drug candidates.

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          Most cited references47

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          The role of ligand efficiency metrics in drug discovery.

          The judicious application of ligand or binding efficiency metrics, which quantify the molecular properties required to obtain binding affinity for a drug target, is gaining traction in the selection and optimization of fragments, hits and leads. Retrospective analysis of recently marketed oral drugs shows that they frequently have highly optimized ligand efficiency values for their targets. Optimizing ligand efficiency metrics based on both molecular mass and lipophilicity, when set in the context of the specific target, has the potential to ameliorate the inflation of these properties that has been observed in current medicinal chemistry practice, and to increase the quality of drug candidates.
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            Recognizing pitfalls in virtual screening: a critical review.

            The aim of virtual screening (VS) is to identify bioactive compounds through computational means, by employing knowledge about the protein target (structure-based VS) or known bioactive ligands (ligand-based VS). In VS, a large number of molecules are ranked according to their likelihood to be bioactive compounds, with the aim to enrich the top fraction of the resulting list (which can be tested in bioassays afterward). At its core, VS attempts to improve the odds of identifying bioactive molecules by maximizing the true positive rate, that is, by ranking the truly active molecules as high as possible (and, correspondingly, the truly inactive ones as low as possible). In choosing the right approach, the researcher is faced with many questions: where does the optimal balance between efficiency and accuracy lie when evaluating a particular algorithm; do some methods perform better than others and in what particular situations; and what do retrospective results tell us about the prospective utility of a particular method? Given the multitude of settings, parameters, and data sets the practitioner can choose from, there are many pitfalls that lurk along the way which might render VS less efficient or downright useless. This review attempts to catalogue published and unpublished problems, shortcomings, failures, and technical traps of VS methods with the aim to avoid pitfalls by making the user aware of them in the first place.
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              Tissue distribution profiles of the human TRPM cation channel family.

              Eight members of the TRP-melastatin (TRPM) subfamily have been identified, whose physiological functions and distribution are poorly characterized. Although tissue expression and distribution patterns have been reported for individual TRPM channels, comparisons between individual studies are not possible because of variations in analysis techniques and tissue selection. We report here a comparative analysis of the expression patterns of all of the human TRPM channels in selected peripheral tissues and the central nervous system (CNS) using two distinct but complimentary approaches: TaqMan and SYBR Green real-time quantitative reverse transcription polymerase chain reaction (RT-PCR). These techniques generated comparative distribution profiles and demonstrated tissue-specific co-expression of TRPM mRNA species, indicating significant potential for the formation of heteromeric channels. TRPM channels 2, 4, 5, 6, and 7 in contrast to 1, 3, and 8 are widely distributed in the CNS and periphery. The tissues demonstrating highest expression for individual family members were brain (TRPM1), brain and bone marrow (TRPM2), brain and pituitary (TRPM3), intestine and prostate (TRPM4), intestine, pancreas, and prostate (TRPM5), intestine and brain (TRPM6), heart, pituitary, bone, and adipose tissue (TRPM7), and prostate and liver (TRPM8). The data reported here will guide the elucidation of TRPM channel physiological functions.
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                Author and article information

                Contributors
                jean-louis.reymond@dcb.unibe.ch
                hugues.abriel@ibmm.unibe.ch
                Journal
                Br J Pharmacol
                Br. J. Pharmacol
                10.1111/(ISSN)1476-5381
                BPH
                British Journal of Pharmacology
                John Wiley and Sons Inc. (Hoboken )
                0007-1188
                1476-5381
                29 April 2018
                June 2018
                29 April 2018
                : 175
                : 12 , Themed Section: Recent Advances in Targeting Ion Channels to Treat Chronic Pain. Guest Editors: Edward B Stevens and Gary J Stephens ( doiID: 10.1111/bph.v175.12 )
                : 2504-2519
                Affiliations
                [ 1 ] Institute of Biochemistry and Molecular Medicine, National Center of Competence in Research NCCR TransCure University of Bern Bern Switzerland
                [ 2 ] Department of Chemistry and Biochemistry, National Center of Competence in Research NCCR TransCure University of Bern Bern Switzerland
                Author notes
                [*] [* ] Correspondence

                Hugues Abriel, Institute of Biochemistry and Molecular Medicine, National Center of Competence in Research NCCR TransCure, University of Bern, Bühlstrasse Bern, Switzerland, and Jean‐Louis Reymond, Department of Chemistry and Biochemistry, National Center of Competence in Research NCCR TransCure, University of Bern, Bern, Switzerland. E‐mail: hugues.abriel@ 123456ibmm.unibe.ch ; jean-louis.reymond@ 123456dcb.unibe.ch

                [†]

                Co‐first authors.

                Author information
                http://orcid.org/0000-0002-4620-8507
                Article
                BPH14220 2017-BJP-1252-RP.R1
                10.1111/bph.14220
                6002741
                29579323
                18d9d29b-50a0-4b49-952f-43aa9214edd3
                © 2018 The Authors. British Journal of Pharmacology published by John Wiley & Sons Ltd on behalf of British Pharmacological Society.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 09 October 2017
                : 08 March 2018
                : 16 March 2018
                Page count
                Figures: 8, Tables: 2, Pages: 16, Words: 7823
                Funding
                Funded by: National Centre of Competence in Research (NCCR) TransCure
                Award ID: 51NF40‐160620
                Funded by: Schweizerische Herzstiftung
                Categories
                Research Paper
                Research Papers
                Custom metadata
                2.0
                bph14220
                June 2018
                Converter:WILEY_ML3GV2_TO_NLMPMC version:version=5.4.1.1 mode:remove_FC converted:15.06.2018

                Pharmacology & Pharmaceutical medicine
                Pharmacology & Pharmaceutical medicine

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