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      Sculpting the surface: Structural patterning of plant epidermis

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          Summary

          Plant epidermis are multifunctional surfaces that directly affect how plants interact with animals or microorganisms and influence their ability to harvest or protect from abiotic factors. To do this, plants rely on minuscule structures that confer remarkable properties to their outer layer. These microscopic features emerge from the hierarchical organization of epidermal cells with various shapes and dimensions combined with different elaborations of the cuticle, a protective film that covers plant surfaces. Understanding the properties and functions of those tridimensional elements as well as disentangling the mechanisms that control their formation and spatial distribution warrant a multidisciplinary approach. Here we show how interdisciplinary efforts of coupling modern tools of experimental biology, physics, and chemistry with advanced computational modeling and state-of-the art microscopy are yielding broad new insights into the seemingly arcane patterning processes that sculpt the outer layer of plants.

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          Biological sciences; Bioengineering; Biologically inspired engineering; Biotechnology; Plant biotechnology; Biophysics; Plant biology; Plant morphology; Plant anatomy; Materials science

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          Engineering Quantitative Trait Variation for Crop Improvement by Genome Editing

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            FibrilTool, an ImageJ plug-in to quantify fibrillar structures in raw microscopy images.

            Cell biology heavily relies on the behavior of fibrillar structures, such as the cytoskeleton, yet the analysis of their behavior in tissues often remains qualitative. Image analysis tools have been developed to quantify this behavior, but they often involve an image pre-processing stage that may bias the output and/or they require specific software. Here we describe FibrilTool, an ImageJ plug-in based on the concept of nematic tensor, which can provide a quantitative description of the anisotropy of fiber arrays and their average orientation in cells, directly from raw images obtained by any form of microscopy. FibrilTool has been validated on microtubules, actin and cellulose microfibrils, but it may also help analyze other fibrillar structures, such as collagen, or the texture of various materials. The tool is ImageJ-based, and it is therefore freely accessible to the scientific community and does not require specific computational setup. The tool provides the average orientation and anisotropy of fiber arrays in a given region of interest (ROI) in a few seconds.
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              Morphogen gradients: from generation to interpretation.

              Morphogens are long-range signaling molecules that pattern developing tissues in a concentration-dependent manner. The graded activity of morphogens within tissues exposes cells to different signal levels and leads to region-specific transcriptional responses and cell fates. In its simplest incarnation, a morphogen signal forms a gradient by diffusion from a local source and clearance in surrounding tissues. Responding cells often transduce morphogen levels in a linear fashion, which results in the graded activation of transcriptional effectors. The concentration-dependent expression of morphogen target genes is achieved by their different binding affinities for transcriptional effectors as well as inputs from other transcriptional regulators. Morphogen distribution and interpretation are the result of complex interactions between the morphogen and responding tissues. The response to a morphogen is dependent not simply on morphogen concentration but also on the duration of morphogen exposure and the state of the target cells. In this review, we describe the morphogen concept and discuss the mechanisms that underlie the generation, modulation, and interpretation of morphogen gradients.
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                Author and article information

                Contributors
                Journal
                iScience
                iScience
                iScience
                Elsevier
                2589-0042
                25 October 2021
                19 November 2021
                25 October 2021
                : 24
                : 11
                : 103346
                Affiliations
                [1 ]The Sainsbury Laboratory, Bateman Street, CB2 1LR, University of Cambridge, Cambridge, UK
                [2 ]Department of Genetics, Downing Site, CB2 3EJ, University of Cambridge, Cambridge, UK
                Author notes
                []Corresponding author edwige.moyroud@ 123456slcu.cam.ac.uk
                Article
                S2589-0042(21)01315-8 103346
                10.1016/j.isci.2021.103346
                8602031
                34820605
                16e7b64b-f33b-4d7d-b49b-b660d19429a3
                © 2021 The Author(s)

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

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                biological sciences,bioengineering,biologically inspired engineering,biotechnology,plant biotechnology,biophysics,plant biology,plant morphology,plant anatomy,materials science

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