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      Dissolved and particulate trace metal micronutrients under the McMurdo Sound seasonal sea ice: basal sea ice communities as a capacitor for iron

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          Abstract

          Dissolved and particulate metal concentrations are reported from three sites beneath and at the base of the McMurdo Sound seasonal sea ice in the Ross Sea of Antarctica. This dataset provided insight into Co and Mn biogeochemistry, supporting a previous hypothesis for water column mixing occurring faster than scavenging. Three observations support this: first, Mn-containing particles with Mn/Al ratios in excess of the sediment were present in the water column, implying the presence of bacterial Mn-oxidation processes. Second, dissolved and labile Co were uniform with depth beneath the sea ice after the winter season. Third, dissolved Co:PO 3− 4 ratios were consistent with previously observed Ross Sea stoichiometry, implying that over-winter scavenging was slow relative to mixing. Abundant dissolved Fe and Mn were consistent with a winter reserve concept, and particulate Al, Fe, Mn, and Co covaried, implying that these metals behaved similarly. Elevated particulate metals were observed in proximity to the nearby Islands, with particulate Fe/Al ratios similar to that of nearby sediment, consistent with a sediment resuspension source. Dissolved and particulate metals were elevated at the shallowest depths (particularly Fe) with elevated particulate P/Al and Fe/Al ratios in excess of sediments, demonstrating a sea ice biomass source. The sea ice biomass was extremely dense (chl a >9500 μg/L) and contained high abundances of particulate metals with elevated metal/Al ratios. A hypothesis for seasonal accumulation of bioactive metals at the base of the McMurdo Sound sea ice by the basal algal community is presented, analogous to a capacitor that accumulates iron during the spring and early summer. The release and transport of particulate metals accumulated at the base of the sea ice by sloughing is discussed as a potentially important mechanism in providing iron nutrition during polynya phytoplankton bloom formation and could be examined in future oceanographic expeditions.

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          Vertex: phytoplankton/iron studies in the Gulf of Alaska

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            Comparative genomics of the vitamin B12 metabolism and regulation in prokaryotes.

            Using comparative analysis of genes, operons, and regulatory elements, we describe the cobalamin (vitamin B12) biosynthetic pathway in available prokaryotic genomes. Here we found a highly conserved RNA secondary structure, the regulatory B12 element, which is widely distributed in the upstream regions of cobalamin biosynthetic/transport genes in eubacteria. In addition, the binding signal (CBL-box) for a hypothetical B12 regulator was identified in some archaea. A search for B12 elements and CBL-boxes and positional analysis identified a large number of new candidate B12-regulated genes in various prokaryotes. Among newly assigned functions associated with the cobalamin biosynthesis, there are several new types of cobalt transporters, ChlI and ChlD subunits of the CobN-dependent cobaltochelatase complex, cobalt reductase BluB, adenosyltransferase PduO, several new proteins linked to the lower ligand assembly pathway, l-threonine kinase PduX, and a large number of other hypothetical proteins. Most missing genes detected within the cobalamin biosynthetic pathways of various bacteria were identified as nonorthologous substitutes. The variable parts of the cobalamin metabolism appear to be the cobalt transport and insertion, the CobG/CbiG- and CobF/CbiD-catalyzed reactions, and the lower ligand synthesis pathway. The most interesting result of analysis of B12 elements is that B12-independent isozymes of the methionine synthase and ribonucleotide reductase are regulated by B12 elements in bacteria that have both B12-dependent and B12-independent isozymes. Moreover, B12 regulons of various bacteria are thought to include enzymes from known B12-dependent or alternative pathways.
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              The contrasting biogeochemistry of iron and manganese in the Pacific Ocean

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                Author and article information

                Journal
                Front Chem
                Front Chem
                Front. Chem.
                Frontiers in Chemistry
                Frontiers Media S.A.
                2296-2646
                18 June 2013
                30 October 2013
                2013
                : 1
                : 25
                Affiliations
                [1] 1Stanley Watson Biogeochemistry Laboratory, Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution Woods Hole, MA, USA
                [2] 2Department of Earth Atmospheric and Planetary Science, Massachusetts Institute of Technology Cambridge, MA, USA
                [3] 3Microbial and Environmental Genomics Group, J. Craig Venter Institute San Diego, CA, USA
                [4] 4Integrative Oceanography Division, Scripps Institution of Oceanography, University of California San Diego, CA, USA
                Author notes

                Edited by: Brian T. Glazer, University of Hawaii, USA

                Reviewed by: Benjamin Kocar, Stanford University, USA; Ana M. A. Islas, University of Alaska Fairbanks, USA; Philip Boyd, University of Otago, New Zealand

                *Correspondence: Mak A. Saito, Woods Hole Oceanographic Institution MS#51, 266 Woods Hole Rd., Woods Hole, MA 03245, USA e-mail: msaito@ 123456whoi.edu

                This article was submitted to Microbiological Chemistry, a section of the journal Frontiers in Chemistry.

                Article
                10.3389/fchem.2013.00025
                3982526
                24790953
                154280e8-9667-4e6e-b9fa-c9e7411490a7
                Copyright © 2013 Noble, Moran, Allen and Saito.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 08 May 2013
                : 04 October 2013
                Page count
                Figures: 11, Tables: 1, Equations: 1, References: 79, Pages: 18, Words: 12895
                Categories
                Microbiology
                Original Research Article

                ross sea,trace metals,cobalt,iron,manganese,sea ice,antarctica,biogeochemical cycling

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