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      Long‐term dynamics of natural killer cells in response to SARS‐CoV‐2 vaccination: Persistently enhanced activity postvaccination

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          Abstract

          Natural Killer (NK) cells play a significant role in the early defense against virus infections and cancer. Recent studies have demonstrated the involvement of NK cells in both the induction and effector phases of vaccine‐induced immunity in various contexts. However, their role in shaping immune responses following SARS‐CoV‐2 vaccination remains poorly understood. To address this matter, we conducted a comprehensive analysis of NK cell phenotype and function in SARS‐CoV‐2 unexposed individuals who received the BNT162b2 vaccine. We employed a longitudinal study design and utilized a panel of 53 15‐mer overlapping peptides covering the receptor binding domain (RBD) of the SARS‐CoV‐2 Spike protein to assess NK cell function at 0 and 20 days following the first vaccine, and 30 and 240 days following booster. Additionally, we evaluated the levels of total IgG anti‐Spike antibodies and their potential neutralizing ability. Our findings revealed an increased NK cell activity upon re‐exposure to RBD when combined with IL12 and IL18 several months after booster. Concurrently, we observed that the frequencies of NKG2A + NK cells declined over the course of the follow‐up period, while NKG2C increased only in CMV positive subjects. The finding that NK cell functions are inducible 9 months after vaccination upon re‐exposure to RBD and cytokines, sheds light on the role of NK cells in contributing to SARS‐CoV‐2 vaccine‐induced immune protection and pave the way to further studies in the field.

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          Most cited references48

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          Longitudinal observation and decline of neutralizing antibody responses in the three months following SARS-CoV-2 infection in humans

          Antibody responses to SARS-CoV-2 can be detected in most infected individuals 10-15 d after the onset of COVID-19 symptoms. However, due to the recent emergence of SARS-CoV-2 in the human population, it is not known how long antibody responses will be maintained or whether they will provide protection from reinfection. Using sequential serum samples collected up to 94 d post onset of symptoms (POS) from 65 individuals with real-time quantitative PCR-confirmed SARS-CoV-2 infection, we show seroconversion (immunoglobulin (Ig)M, IgA, IgG) in >95% of cases and neutralizing antibody responses when sampled beyond 8 d POS. We show that the kinetics of the neutralizing antibody response is typical of an acute viral infection, with declining neutralizing antibody titres observed after an initial peak, and that the magnitude of this peak is dependent on disease severity. Although some individuals with high peak infective dose (ID50 > 10,000) maintained neutralizing antibody titres >1,000 at >60 d POS, some with lower peak ID50 had neutralizing antibody titres approaching baseline within the follow-up period. A similar decline in neutralizing antibody titres was observed in a cohort of 31 seropositive healthcare workers. The present study has important implications when considering widespread serological testing and antibody protection against reinfection with SARS-CoV-2, and may suggest that vaccine boosters are required to provide long-lasting protection.
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            Cytomegalovirus infection drives adaptive epigenetic diversification of NK cells with altered signaling and effector function.

            The mechanisms underlying human natural killer (NK) cell phenotypic and functional heterogeneity are unknown. Here, we describe the emergence of diverse subsets of human NK cells selectively lacking expression of signaling proteins after human cytomegalovirus (HCMV) infection. The absence of B and myeloid cell-related signaling protein expression in these NK cell subsets correlated with promoter DNA hypermethylation. Genome-wide DNA methylation patterns were strikingly similar between HCMV-associated adaptive NK cells and cytotoxic effector T cells but differed from those of canonical NK cells. Functional interrogation demonstrated altered cytokine responsiveness in adaptive NK cells that was linked to reduced expression of the transcription factor PLZF. Furthermore, subsets of adaptive NK cells demonstrated significantly reduced functional responses to activated autologous T cells. The present results uncover a spectrum of epigenetically unique adaptive NK cell subsets that diversify in response to viral infection and have distinct functional capabilities compared to canonical NK cell subsets.
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              Cytokine activation induces human memory-like NK cells.

              Natural killer (NK) cells are lymphocytes that play an important role in the immune response to infection and malignancy. Recent studies in mice have shown that stimulation of NK cells with cytokines or in the context of a viral infection results in memory-like properties. We hypothesized that human NK cells exhibit such memory-like properties with an enhanced recall response after cytokine preactivation. In the present study, we show that human NK cells preactivated briefly with cytokine combinations including IL-12, IL-15, and IL-18 followed by a 7- to 21-day rest have enhanced IFN-γ production after restimulation with IL-12 + IL-15, IL-12 + IL-18, or K562 leukemia cells. This memory-like phenotype was retained in proliferating NK cells. In CD56(dim) NK cells, the memory-like IFN-γ response was correlated with the expression of CD94, NKG2A, NKG2C, and CD69 and a lack of CD57 and KIR. Therefore, human NK cells have functional memory-like properties after cytokine activation, which provides a novel rationale for integrating preactivation with combinations of IL-12, IL-15, and IL-18 into NK cell immunotherapy strategies.
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                Author and article information

                Contributors
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                Journal
                Journal of Medical Virology
                Journal of Medical Virology
                Wiley
                0146-6615
                1096-9071
                April 2024
                April 03 2024
                April 2024
                : 96
                : 4
                Affiliations
                [1 ] Division of Clinical Immunology – Infectious Diseases, Department of Research Fondazione IRCCS Policlinico San Matteo Pavia Italy
                [2 ] Department of Internal Medicine and Therapeutics University of Pavia Pavia Italy
                [3 ] Department of Pathophysiology and Transplantation University of Milano Milano Italy
                [4 ] Infectious Diseases Unit Foundation IRCCS Ca’ Granda Ospedale Maggiore Policlinico Milano Italy
                [5 ] Department of Microbiology and Virology, Molecular Virology Unit, Fondazione IRCCS Policlinico S. Matteo Pavia Italy
                [6 ] Department of Clinical, Surgical, Diagnostic, and Pediatric Sciences University of Pavia Pavia Italy
                [7 ] Department of Clinical Sciences, Infectious Diseases and Immunopathology, L. Sacco Hospital Università di Milano Milan Italy
                [8 ] Centre for Multidisciplinary Research in Health Science (MACH) University of Milano Milano Italy
                Article
                10.1002/jmv.29585
                13b3ed8c-e35f-484b-88a6-ab4788cd1790
                © 2024

                http://creativecommons.org/licenses/by-nc-nd/4.0/

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