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      GC-MS chemical profiling, antioxidant, anti-diabetic, and anti-inflammatory activities of ethyl acetate fraction of Spilanthes filicaulis (Schumach. and Thonn.) C.D. Adams leaves: experimental and computational studies

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          Abstract

          Introduction: This study aimed to investigate the chemical profile of GC-MS, antioxidant, anti-diabetic, and anti-inflammatory activities of the ethyl acetate fraction of Spilanthes filicaulis leaves (EFSFL) via experimental and computational studies.

          Methods: After inducing oxidative damage with FeSO 4, we treated the tissues with different concentrations of EFSFL. An in-vitro analysis of EFSFL was carried out to determine its potential for antioxidant, anti-diabetic, and anti-inflammatory activities. We also measured the levels of CAT, SOD, GSH, and MDA.

          Results and discussion: EFSFL exhibited anti-inflammatory properties through membrane stabilizing properties (IC 50 = 572.79 μg/ml), proteinase inhibition (IC 50 = 319.90 μg/ml), and inhibition of protein denaturation (IC 50 = 409.88 μg/ml). Furthermore, EFSFL inhibited α-amylase (IC 50 = 169.77 μg/ml), α-glucosidase (IC 50 = 293.12 μg/ml) and DPP-IV (IC 50 = 380.94 μg/ml) activities, respectively. Our results indicated that induction of tissue damage reduced the levels of GSH, SOD, and CAT activities, and increased MDA levels. However, EFSFL treatment restores these levels to near normal. GC-MS profiling shows that EFSFL contains 13 compounds, with piperine being the most abundant. In silico interaction of the phytoconstituents using molecular and ensembled-based docking revealed strong binding tendencies of two hit compounds to DPP IV (alpha-caryophyllene and piperine with a binding affinity of −7.8 and −7.8 Kcal/mol), α-glucosidase (alpha-caryophyllene and piperine with a binding affinity of −9.6 and −8.9 Kcal/mol), and to α-amylase (piperine and Benzocycloheptano[2,3,4-I,j]isoquinoline, 4,5,6,6a-tetrahydro-1,9-dihydroxy-2,10-dimethoxy-5-methyl with a binding affinity of −7.8 and −7.9 Kcal/mol), respectively. These compounds also presented druggable properties with favorable ADMET. Conclusively, the antioxidant, antidiabetic, and anti-inflammatory activities of EFSFL could be due to the presence of secondary metabolites.

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          AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading.

          AutoDock Vina, a new program for molecular docking and virtual screening, is presented. AutoDock Vina achieves an approximately two orders of magnitude speed-up compared with the molecular docking software previously developed in our lab (AutoDock 4), while also significantly improving the accuracy of the binding mode predictions, judging by our tests on the training set used in AutoDock 4 development. Further speed-up is achieved from parallelism, by using multithreading on multicore machines. AutoDock Vina automatically calculates the grid maps and clusters the results in a way transparent to the user. Copyright 2009 Wiley Periodicals, Inc.
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            AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility.

            We describe the testing and release of AutoDock4 and the accompanying graphical user interface AutoDockTools. AutoDock4 incorporates limited flexibility in the receptor. Several tests are reported here, including a redocking experiment with 188 diverse ligand-protein complexes and a cross-docking experiment using flexible sidechains in 87 HIV protease complexes. We also report its utility in analysis of covalently bound ligands, using both a grid-based docking method and a modification of the flexible sidechain technique. (c) 2009 Wiley Periodicals, Inc.
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              SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules

              To be effective as a drug, a potent molecule must reach its target in the body in sufficient concentration, and stay there in a bioactive form long enough for the expected biologic events to occur. Drug development involves assessment of absorption, distribution, metabolism and excretion (ADME) increasingly earlier in the discovery process, at a stage when considered compounds are numerous but access to the physical samples is limited. In that context, computer models constitute valid alternatives to experiments. Here, we present the new SwissADME web tool that gives free access to a pool of fast yet robust predictive models for physicochemical properties, pharmacokinetics, drug-likeness and medicinal chemistry friendliness, among which in-house proficient methods such as the BOILED-Egg, iLOGP and Bioavailability Radar. Easy efficient input and interpretation are ensured thanks to a user-friendly interface through the login-free website http://www.swissadme.ch. Specialists, but also nonexpert in cheminformatics or computational chemistry can predict rapidly key parameters for a collection of molecules to support their drug discovery endeavours.
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                Author and article information

                Contributors
                Journal
                Front Pharmacol
                Front Pharmacol
                Front. Pharmacol.
                Frontiers in Pharmacology
                Frontiers Media S.A.
                1663-9812
                20 July 2023
                2023
                : 14
                : 1235810
                Affiliations
                [1] 1 Phytomedicine, Molecular Toxicology, and Computational Biochemistry Research Laboratory (PMTCB-RL) , Department of Biochemistry , Bowen University , Iwo, Nigeria
                [2] 2 Department of Biochemistry , Bingham University , Karu, Nigeria
                [3] 3 Department of Pure and Applied Biology , Bowen University , Iwo, Nigeria
                [4] 4 Department of Anatomy , Bowen University , Iwo, Nigeria
                [5] 5 Department of Microbiology , Bowen University , Iwo, Nigeria
                [6] 6 Department of Biochemistry , Landmark University , Omu-Aran, Nigeria
                [7] 7 Department of Pharmacognosy and Environmental Medicine , University of Nigeria , Nsukka, Nigeria
                [8] 8 Department of Physiology , Afe Babalola University , Ado-Ekiti, Nigeria
                [9] 9 Department of Life and Consumer Sciences , School of Agriculture and Life Sciences , University of South Africa , Roodepoort, South Africa
                [10] 10 Department of Biochemistry , Ekiti State University , Ado-Ekiti, Nigeria
                Author notes

                Edited by: Ochuko Lucky Erukainure, University of the Free State, South Africa

                Reviewed by: Prabhakar Semwal, Graphic Era University, India

                Mithun Rudrapal, Vignan’s Foundation for Science, Technology and Research, India

                *Correspondence: Oluwafemi Adeleke Ojo, oluwafemi.ojo@ 123456bowen.edu.ng
                Article
                1235810
                10.3389/fphar.2023.1235810
                10399624
                37547334
                12bd1906-2a42-4950-b007-d7eab98af1a0
                Copyright © 2023 Ojo, Ogunlakin, Gyebi, Ayokunle, Odugbemi, Babatunde, Ajayi-Odoko, Iyobhebhe, Ezea, Akintayo, Ayeleso, Ojo and Ojo.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 06 June 2023
                : 29 June 2023
                Funding
                This research was funded by Bowen University via Bowen University Research Grant (BURG) (Grant No: BURG/2023/006) for 2022-2023.
                Categories
                Pharmacology
                Original Research
                Custom metadata
                Ethnopharmacology

                Pharmacology & Pharmaceutical medicine
                spilanthes filicaulis,antioxidant,antidiabetic,anti-inflammatory,gc-ms profiling,molecular docking and dynamic simulations

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