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      Biallelic BICD2 Variant is a Novel Candidate for Cohen-Like Syndrome

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          Abstract

          Heterozygous mutations in Bicaudal D2 Drosophila homolog 2 ( BICD2) gene, encodes a vesicle transport protein involved in dynein-mediated movement along microtubules, are responsible for an exceedingly rare autosomal dominant spinal muscular atrophy type 2A which starts in the childhood and predominantly effects lower extremities. Recently, a more severe form, type 2B, has also been described. Here, we present a patient born to a consanguineous union and who suffered from intellectual disability, speech delay, epilepsy, happy facial expression, truncal obesity with tappering fingers, and joint hypermobility. Whole-exome sequencing analysis revealed a rare, homozygous missense mutation (c.731T>C; p.Leu244Pro) in BICD2 gene. This finding presents the first report in the literature for homozygous BICD2 mutations and its association with a Cohen-Like syndrome. Patients presenting with Cohen-Like phenotypes should be further interrogated for mutations in BICD2.

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          Most cited references24

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          Standards and Guidelines for the Interpretation of Sequence Variants: A Joint Consensus Recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology

          The American College of Medical Genetics and Genomics (ACMG) previously developed guidance for the interpretation of sequence variants. 1 In the past decade, sequencing technology has evolved rapidly with the advent of high-throughput next generation sequencing. By adopting and leveraging next generation sequencing, clinical laboratories are now performing an ever increasing catalogue of genetic testing spanning genotyping, single genes, gene panels, exomes, genomes, transcriptomes and epigenetic assays for genetic disorders. By virtue of increased complexity, this paradigm shift in genetic testing has been accompanied by new challenges in sequence interpretation. In this context, the ACMG convened a workgroup in 2013 comprised of representatives from the ACMG, the Association for Molecular Pathology (AMP) and the College of American Pathologists (CAP) to revisit and revise the standards and guidelines for the interpretation of sequence variants. The group consisted of clinical laboratory directors and clinicians. This report represents expert opinion of the workgroup with input from ACMG, AMP and CAP stakeholders. These recommendations primarily apply to the breadth of genetic tests used in clinical laboratories including genotyping, single genes, panels, exomes and genomes. This report recommends the use of specific standard terminology: ‘pathogenic’, ‘likely pathogenic’, ‘uncertain significance’, ‘likely benign’, and ‘benign’ to describe variants identified in Mendelian disorders. Moreover, this recommendation describes a process for classification of variants into these five categories based on criteria using typical types of variant evidence (e.g. population data, computational data, functional data, segregation data, etc.). Because of the increased complexity of analysis and interpretation of clinical genetic testing described in this report, the ACMG strongly recommends that clinical molecular genetic testing should be performed in a CLIA-approved laboratory with results interpreted by a board-certified clinical molecular geneticist or molecular genetic pathologist or equivalent.
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            Is Open Access

            VarSome: the human genomic variant search engine

            Abstract Summary VarSome.com is a search engine, aggregator and impact analysis tool for human genetic variation and a community-driven project aiming at sharing global expertise on human variants. Availability and implementation VarSome is freely available at http://varsome.com. Supplementary information Supplementary data are available at Bioinformatics online.
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              Spatiotemporal transcriptome of the human brain

              Summary Here we report the generation and analysis of genome-wide exon-level transcriptome data from 16 brain regions comprising the cerebellar cortex, mediodorsal nucleus of the thalamus, striatum, amygdala, hippocampus, and 11 areas of the neocortex. The dataset was generated from 1,340 tissue samples collected from one or both hemispheres of 57 postmortem human brains, spanning from embryonic development to late adulthood and representing males and females of multiple ethnicities. We also performed genotyping of 2.5 million SNPs and assessed copy number variations for all donors. Approximately 86% of protein-coding genes were found to be expressed using stringent criteria, and over 90% of these were differentially regulated at the whole transcript or exon level across regions and/or time. The majority of these spatiotemporal differences occurred before birth, followed by an increase in the similarity among regional transcriptomes during postnatal lifespan. Genes were organized into functionally distinct co-expression networks, and sex differences were present in gene expression and exon usage. Finally, we demonstrate how these results can be used to profile trajectories of genes associated with neurodevelopmental processes, cell types, neurotransmitter systems, autism, and schizophrenia, as well as to discover associations between SNPs and spatiotemporal gene expression. This study provides a comprehensive, publicly available dataset on the spatiotemporal human brain transcriptome and new insights into the transcriptional foundations of human neurodevelopment.
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                Author and article information

                Journal
                9808008
                20962
                J Hum Genet
                J Hum Genet
                Journal of human genetics
                1434-5161
                1435-232X
                29 March 2022
                September 2022
                25 March 2022
                25 September 2022
                : 67
                : 9
                : 553-556
                Affiliations
                [1 ]Departments of Neurosurgery, Neurobiology and Genetics, Yale School of Medicine, New Haven, CT 06520-8082, USA
                [2 ]Department of Pediatrics, Division of Pediatric Genetics, Cerrahpasa Medical School, Istanbul University-Cerrahpasa, Istanbul, Turkey.
                [3 ]Department of Neurology, Cerrahpasa Medical School, Istanbul University-Cerrahpasa, Istanbul, Turkey.
                [4 ]Department of Neurosciences, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA 92093, USA
                [5 ]Rady Children’s Institute for Genomic Medicine, San Diego, CA 92025, USA
                [6 ]Yale Center for Genome Analysis, Yale School of Medicine, New Haven, 06510, CT, USA
                Author notes

                Present Address: Department of Medical Genetics, School of Medicine, Dokuz Eylul University, 35330, Izmir, Turkey and Department of Molecular Medicine, Institute of Health Sciences, Dokuz Eylul University, 35330, Izmir, Turkey.

                [* ] Corresponding authors: Ahmet Okay Caglayan, M.D., Departments of Neurosurgery, Neurobiology and Genetics, Yale School of Medicine, New Haven, CT 06520-8082, USA, ahmet.caglayan@ 123456yale.edu ; ahmetokay.caglayan@ 123456deu.edu.tr , Tel: +90-535-584-7978, Beyhan Tuysuz, M.D., Department of Pediatrics, Division of Pediatric Genetics, Cerrahpasa Medical School, Istanbul University-Cerrahpasa, Istanbul, Turkey. beyhan@ 123456istanbul.edu.tr Tel: +90-532-507-7863
                Article
                NIHMS1787071
                10.1038/s10038-022-01032-1
                9420744
                35338243
                10fa77c5-df73-4b97-9838-740fd51185de

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                Categories
                Article

                Genetics
                bicd2,cohen syndrome,genetic counseling,whole exome sequencing
                Genetics
                bicd2, cohen syndrome, genetic counseling, whole exome sequencing

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