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      Analysis of the microbial diversity in takin ( Budorcas taxicolor) feces

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          Abstract

          Introduction

          The intestinal tract of animals is a complex and dynamic microecosystem that is inextricably linked to the health of the host organism. Takin ( Budorcas taxicolor) is a threatened species, and its gut microbiome is poorly understood. Therefore, this study aimed to analyze the microbial community structure and potential pathogens of takin.

          Methods

          Takin fecal samples were collected from five sites in a nature reserve to ensure the uniformity of sample collection, determine the effects of different geographical locations on gut microbes, and analyze the differences in microbial communities between sites. Subsequently, high-throughput 16S rDNA gene sequencing was performed to analyze the microbial diversity and potential pathogens in the gut; the findings were verified by isolating and culturing bacteria and metagenomic sequencing.

          Results and discussion

          The takin gut microflora consisted mainly of four phyla: Firmicutes (69.72%), Bacteroidota (13.55%), Proteobacteria (9.02%), and Verrucomicrobiota (3.77%), representing 96.07% of all microorganisms. The main genera were UCG-005 (20.25%), UCG-010_unclassified (12.35%), Firmicus_unclassified (4.03%), and Rumino coccsea_unclassified (3.49%), while the main species were assigned to Bacteria_unclassified. Potential pathogens were also detected, which could be used as a reference for the protection of takin. Pseudomonas presented the highest abundance at Shuichiping and may represent the main pathogen responsible for the death of takin at the site. This study provides an important reference for investigating the composition of the bacterial community in the intestine of takin.

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          Most cited references39

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          Pathology of Neurodegenerative Diseases.

          Neurodegenerative disorders are characterized by progressive loss of selectively vulnerable populations of neurons, which contrasts with select static neuronal loss because of metabolic or toxic disorders. Neurodegenerative diseases can be classified according to primary clinical features (e.g., dementia, parkinsonism, or motor neuron disease), anatomic distribution of neurodegeneration (e.g., frontotemporal degenerations, extrapyramidal disorders, or spinocerebellar degenerations), or principal molecular abnormality. The most common neurodegenerative disorders are amyloidoses, tauopathies, α-synucleinopathies, and TDP-43 proteinopathies. The protein abnormalities in these disorders have abnormal conformational properties. Growing experimental evidence suggests that abnormal protein conformers may spread from cell to cell along anatomically connected pathways, which may in part explain the specific anatomical patterns observed at autopsy. In this review, we detail the human pathology of select neurodegenerative disorders, focusing on their main protein aggregates.
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            Single-cell transcriptome profiling reveals neutrophil heterogeneity in homeostasis and infection

            The full neutrophil heterogeneity and differentiation landscape remains incompletely characterized. Here we profiled >25,000 differentiating and mature mouse neutrophils using single-cell RNA sequencing to provide a comprehensive transcriptional landscape of neutrophil maturation, function, and fate decision in their steady state and during bacterial infection. Eight neutrophil populations were defined by distinct molecular signatures. The three mature peripheral blood neutrophil subsets arise from distinct maturing bone marrow neutrophil subsets. Driven by both known and uncharacterized transcription factors, neutrophils gradually acquire microbicidal capability as they traverse the transcriptional landscape, representing an evolved mechanism for fine-tuned regulation of an effective but balanced neutrophil response. Bacterial infection reprograms the genetic architecture of neutrophil populations, alters dynamic transition between each subpopulation, and primes neutrophils for augmented functionality without affecting overall heterogeneity. In summary, these data establish a reference model and general framework for studying neutrophil-related disease mechanisms, biomarkers, and therapeutic targets at single-cell resolution.
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              Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter

              Bacteria play a central role in the cycling of carbon, yet our understanding of the relationship between the taxonomic composition and the degradation of dissolved organic matter (DOM) is still poor. In this experimental study, we were able to demonstrate a direct link between community composition and ecosystem functioning in that differently structured aquatic bacterial communities differed in their degradation of terrestrially derived DOM. Although the same amount of carbon was processed, both the temporal pattern of degradation and the compounds degraded differed among communities. We, moreover, uncovered that low-molecular-weight carbon was available to all communities for utilisation, whereas the ability to degrade carbon of greater molecular weight was a trait less widely distributed. Finally, whereas the degradation of either low- or high-molecular-weight carbon was not restricted to a single phylogenetic clade, our results illustrate that bacterial taxa of similar phylogenetic classification differed substantially in their association with the degradation of DOM compounds. Applying techniques that capture the diversity and complexity of both bacterial communities and DOM, our study provides new insight into how the structure of bacterial communities may affect processes of biogeochemical significance.
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                Author and article information

                Contributors
                URI : https://loop.frontiersin.org/people/1380995/overviewRole: Role: Role: Role: Role:
                Role: Role: Role: Role: Role: Role: Role:
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                URI : https://loop.frontiersin.org/people/2161651/overviewRole: Role: Role: Role:
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                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                22 December 2023
                2023
                : 14
                : 1303085
                Affiliations
                [1] 1Key Laboratory of Animal Disease and Human Health of Sichuan Province, College of Veterinary Medicine, Sichuan Agricultural University , Chengdu, China
                [2] 2Management Office of Tangjiahe National Nature Reserve , Qingchuan, China
                [3] 3Sichuan Provincial Center for Animal Disease Prevention and Control , Chengdu, China
                [4] 4College of Life Sciences, Sichuan Agricultural University , Chengdu, China
                Author notes

                Edited by: Huan Li, Lanzhou University, China

                Reviewed by: Songrui Liu, Chengdu Research Base of Giant Panda Breeding, China; Shu-cheng Huang, Henan Agricultural University, China; Qin Tang, Huazhong Agricultural University, China

                *Correspondence: Limin Shen, 292647210@ 123456qq.com

                These authors have contributed equally to this work and share first authorship

                Article
                10.3389/fmicb.2023.1303085
                10768053
                38188576
                109b7a23-985c-421e-b394-1d0400e1f885
                Copyright © 2023 Ma, Wang, Cai, Xiao, He, Liu, Chen, Wang, Shen and Gu.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 27 September 2023
                : 04 December 2023
                Page count
                Figures: 10, Tables: 0, Equations: 0, References: 40, Pages: 12, Words: 7455
                Funding
                The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This study was supported by the Laboratory testing of wild animal and domestic animal disease samples in Tangjiahe National Nature Reserve in 2023 (CXYCS[2023]018).
                Categories
                Microbiology
                Original Research
                Custom metadata
                Evolutionary and Genomic Microbiology

                Microbiology & Virology
                takin,budorcas taxicolor,gut microbiota,microbial diversity,16s rdna high-throughput sequencing,metagenomics,conditioned pathogen

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