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      Tilt in Place Microscopy: a Simple, Low-Cost Solution to Image Neural Responses to Body Rotations

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          Abstract

          Animals use information about gravity and other destabilizing forces to balance and navigate through their environment. Measuring how brains respond to these forces requires considerable technical knowledge and/or financial resources. We present a simple alternative—Tilt In Place Microscopy (TIPM), a low-cost and noninvasive way to measure neural activity following rapid changes in body orientation. Here, we used TIPM to study vestibulospinal neurons in larval zebrafish during and immediately after roll tilts. Vestibulospinal neurons responded with reliable increases in activity that varied as a function of ipsilateral tilt amplitude. TIPM differentiated tonic (i.e., sustained tilt) from phasic responses, revealing coarse topography of stimulus sensitivity in the lateral vestibular nucleus. Neuronal variability across repeated sessions was minor relative to trial-to-trial variability, allowing us to use TIPM for longitudinal studies of the same neurons across two developmental time points. There, we observed global increases in response strength and systematic changes in the neural representation of stimulus direction. Our data extend classical characterization of the body tilt representation by vestibulospinal neurons and establish the utility of TIPM to study the neural basis of balance, especially in developing animals.

          SIGNIFICANCE STATEMENT Vestibular sensation influences everything from navigation to interoception. Here, we detail a straightforward, validated, and nearly universal approach to image how the nervous system senses and responds to body tilts. We use our new method to replicate and expand on past findings of tilt sensing by a conserved population of spinal-projecting vestibular neurons. The simplicity and broad compatibility of our approach will democratize the study of the response of the brain to destabilization, particularly across development.

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          Most cited references61

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          Fiji: an open-source platform for biological-image analysis.

          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
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            Ultra-sensitive fluorescent proteins for imaging neuronal activity

            Summary Fluorescent calcium sensors are widely used to image neural activity. Using structure-based mutagenesis and neuron-based screening, we developed a family of ultra-sensitive protein calcium sensors (GCaMP6) that outperformed other sensors in cultured neurons and in zebrafish, flies, and mice in vivo. In layer 2/3 pyramidal neurons of the mouse visual cortex, GCaMP6 reliably detected single action potentials in neuronal somata and orientation-tuned synaptic calcium transients in individual dendritic spines. The orientation tuning of structurally persistent spines was largely stable over timescales of weeks. Orientation tuning averaged across spine populations predicted the tuning of their parent cell. Although the somata of GABAergic neurons showed little orientation tuning, their dendrites included highly tuned dendritic segments (5 - 40 micrometers long). GCaMP6 sensors thus provide new windows into the organization and dynamics of neural circuits over multiple spatial and temporal scales.
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              NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.

              Motion correction is a challenging pre-processing problem that arises early in the analysis pipeline of calcium imaging data sequences. The motion artifacts in two-photon microscopy recordings can be non-rigid, arising from the finite time of raster scanning and non-uniform deformations of the brain medium.
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                Author and article information

                Journal
                J Neurosci
                J Neurosci
                jneuro
                J. Neurosci
                The Journal of Neuroscience
                Society for Neuroscience
                0270-6474
                1529-2401
                8 February 2023
                8 February 2023
                : 43
                : 6
                : 936-948
                Affiliations
                [1]Departments of Otolaryngology and Neuroscience and Physiology, Neuroscience Institute, New York University Grossman School of Medicine, New York, New York 10016
                Author notes
                Correspondence should be addressed to David Schoppik at david.schoppik@ 123456nyulangone.org

                Author contributions: K.R.H., Y.Z., F.A., and D.S. designed research; K.R.H., Y.Z., and F.A. performed research; K.R.H., Y.Z., and F.A. analyzed data; K.R.H. and D.S. wrote paper.

                Author information
                https://orcid.org/0000-0001-7969-9632
                Article
                JN-RM-1736-22
                10.1523/JNEUROSCI.1736-22.2022
                9908314
                36517242
                0fafdbf0-ea5e-4768-a89a-67a6da6f4796
                Copyright © 2023 Hamling et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

                History
                : 13 September 2022
                : 23 November 2022
                : 7 December 2022
                Funding
                Funded by: Brain Research Foundation (BRF), doi 10.13039/100000882;
                Award ID: Fay Frank
                Funded by: Dana Foundation (DF), doi 10.13039/100001068;
                Award ID: David Mahoney Neuroimaging Grant
                Funded by: Leon Levy Foundation, doi 10.13039/100007027;
                Award ID: Fellowship
                Funded by: HHS | NIH | National Institute on Deafness and Other Communication Disorders (NIDCD), doi 10.13039/100000055;
                Award ID: DC017489
                Award ID: DC019554
                Funded by: HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS), doi 10.13039/100000065;
                Award ID: NS125280
                Funded by: Irma T. Hirschl/Monique Weill-Caulier Trust
                Categories
                Research Articles
                Systems/Circuits

                balance,imaging,posture,vestibular,vestibulospinal,zebrafish
                balance, imaging, posture, vestibular, vestibulospinal, zebrafish

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