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      Use of Artificial Intelligence in the Prediction of Chiari Malformation Type 1 Recurrence After Posterior Fossa Decompressive Surgery

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          Abstract

          Purpose

          The purpose of this study was to train a deep learning-based method for the prediction of postoperative recurrence of symptoms in Chiari malformation type 1 (CM1) patients undergoing surgery. Studies suggest that certain radiological and clinical features do exist in patients with treatment failure, though these are inconsistent and poorly defined.

          Methodology

          This study was a retrospective cohort study of patients who underwent primary surgical intervention for CM1 from January 2010 to May 2020. Only patients who completed pre- and postoperative 12-item short form (SF-12) surveys were included and these were used to classify the recurrence or persistence of symptoms. Forty patients had an improvement in overall symptoms while 17 had recurrence or persistence. After magnetic resonance imaging (MRI) data augmentation, a ResNet50, pre-trained on the ImageNet dataset, was used for feature extraction, and then clustering-constrained attention multiple instance learning (CLAM), a weakly supervised multi-instance learning framework, was trained for prediction of recurrence. Five-fold cross-validation was used for the development of MRI only, clinical features only, and a combined machine learning model.

          Results

          This study included 57 patients who underwent CM1 decompression. The recurrence rate was 30%. The combined model incorporating MRI, pre-operative SF-12 physical component scale (PCS), and extent of cerebellar ectopia performed best with an area under the curve (AUC) of 0.71 and an F1 score of 0.74.

          Conclusion

          This is the first study to our knowledge to explore the prediction of postoperative recurrence of symptoms in CM1 patients using machine learning methods and represents the first step toward developing a clinically useful prognostication machine learning model. Further studies utilizing a similar deep learning approach with a larger sample size are needed to improve the performance.

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          On the limited memory BFGS method for large scale optimization

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            Data-efficient and weakly supervised computational pathology on whole-slide images

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              Albumentations: Fast and Flexible Image Augmentations

              Data augmentation is a commonly used technique for increasing both the size and the diversity of labeled training sets by leveraging input transformations that preserve corresponding output labels. In computer vision, image augmentations have become a common implicit regularization technique to combat overfitting in deep learning models and are ubiquitously used to improve performance. While most deep learning frameworks implement basic image transformations, the list is typically limited to some variations of flipping, rotating, scaling, and cropping. Moreover, image processing speed varies in existing image augmentation libraries. We present Albumentations, a fast and flexible open source library for image augmentation with many various image transform operations available that is also an easy-to-use wrapper around other augmentation libraries. We discuss the design principles that drove the implementation of Albumentations and give an overview of the key features and distinct capabilities. Finally, we provide examples of image augmentations for different computer vision tasks and demonstrate that Albumentations is faster than other commonly used image augmentation tools on most image transform operations.
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                Author and article information

                Journal
                Cureus
                Cureus
                2168-8184
                Cureus
                Cureus (Palo Alto (CA) )
                2168-8184
                22 May 2024
                May 2024
                : 16
                : 5
                : e60879
                Affiliations
                [1 ] Neurosurgery, Liverpool Hospital, Sydney, AUS
                [2 ] Medicine, Health, and Human Sciences, Computational NeuroSurgery (CNS) Lab, Macquarie Medical School, Macquarie University, Sydney, AUS
                [3 ] Center of Health Informatics, Macquarie University, Sydney, AUS
                [4 ] Engineering Science, Institute of Biomedical Engineering, University of Oxford, Oxford, GBR
                [5 ] Medicine, Health, and Human Sciences, Macquarie Medical School, Macquarie University, Sydney, AUS
                [6 ] Neurosurgery, Nepean Blue Mountains Local Health District, Sydney, AUS
                [7 ] Center for Applied Artificial Intelligence, School of Computing, Macquarie University, Sydney, AUS
                Author notes
                Article
                10.7759/cureus.60879
                11111598
                38784688
                0f0139e7-a948-4ff2-b8ea-0d09ae499f6d
                Copyright © 2024, King et al.

                This is an open access article distributed under the terms of the Creative Commons Attribution License CC-BY 4.0., which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 22 May 2024
                Categories
                Neurosurgery
                Healthcare Technology

                machine learning,posterior fossa surgery,recurrence,deep learning,chiari malformation

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