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      Gypsum Cave Biofilm Communities are Strongly Influenced by Bat- And Arthropod-Related Fungi

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          Abstract

          The Gypsum Karst of Sorbas, Almeria, southeast Spain, includes a few caves whose entrances are open and allow the entry and roosting of numerous bats. Caves are characterized by their diversity of gypsum speleothems, such as stalactites, coralloids, gypsum crusts, etc. Colored biofilms can be observed on the walls of most caves, among which the Covadura and C3 caves were studied. The objective was to determine the influence that bat mycobiomes may have on the fungal communities of biofilms. The results indicate that the fungi retrieved from white and yellow biofilms in Covadura Cave ( Ascomycota, Mortierellomycota, Basidiomycota) showed a wide diversity, depending on their location, and were highly influenced by the bat population, the guano and the arthropods that thrive in the guano, while C3 Cave was more strongly influenced by soil- and arthropod-related fungi ( Ascomycota, Mortierellomycota), due to the absence of roosting bats.

          Supplementary Information

          The online version contains supplementary material available at 10.1007/s00248-024-02395-y.

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          DADA2: High resolution sample inference from Illumina amplicon data

          We present DADA2, a software package that models and corrects Illumina-sequenced amplicon errors. DADA2 infers sample sequences exactly, without coarse-graining into OTUs, and resolves differences of as little as one nucleotide. In several mock communities DADA2 identified more real variants and output fewer spurious sequences than other methods. We applied DADA2 to vaginal samples from a cohort of pregnant women, revealing a diversity of previously undetected Lactobacillus crispatus variants.
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            Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

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              FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

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                Author and article information

                Contributors
                saiz@irnase.csic.es
                Journal
                Microb Ecol
                Microb Ecol
                Microbial Ecology
                Springer US (New York )
                0095-3628
                1432-184X
                3 June 2024
                3 June 2024
                2024
                : 87
                : 1
                : 80
                Affiliations
                [1 ]Instituto de Recursos Naturales y Agrobiologia, IRNAS-CSIC, ( https://ror.org/0526wrz79) 41012 Sevilla, Spain
                [2 ]Departamento de Biologia y Geologia, Universidad de Almeria, ( https://ror.org/003d3xx08) 04120 Almeria, Spain
                [3 ]Museo Nacional de Ciencias Naturales, MNCN-CSIC, ( https://ror.org/02v6zg374) 28006 Madrid, Spain
                Article
                2395
                10.1007/s00248-024-02395-y
                11147836
                38829422
                0e8e8e56-ee4b-48fa-aa2b-3f8d8635d75e
                © The Author(s) 2024

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 17 April 2024
                : 24 May 2024
                Funding
                Funded by: Consejo Superior de Investigaciones Cientificas (CSIC)
                Categories
                Research
                Custom metadata
                © Springer Science+Business Media, LLC, part of Springer Nature 2024

                Microbiology & Virology
                gypsum outcrops,microbial mats,fungi,ascomycota,basidiomycota,mortierellomycota,lecanicillium,cladosporium,mortierella,podila,bats,arthropods

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