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      Challenges to design-oriented breeding of root system architecture adapted to climate change

      research-article
      1 , *
      Breeding Science
      Japanese Society of Breeding
      DRO1, edaphic stress, qSOR1, QTL, root plasticity, root robustness

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          Abstract

          Roots are essential organs for capturing water and nutrients from the soil. In particular, root system architecture (RSA) determines the extent of the region of the soil where water and nutrients can be gathered. As global climate change accelerates, it will be important to improve belowground plant parts, as well as aboveground ones, because roots are front-line organs in the response to abiotic stresses such as drought, flooding, and salinity stress. However, using conventional breeding based on phenotypic selection, it is difficult to select breeding lines possessing promising RSAs to adapted to abiotic stress because roots remain hidden underground. Therefore, new breeding strategies that do not require phenotypic selection are necessary. Recent advances in molecular biology and biotechnology can be applied to the design-oriented breeding of RSA without phenotypic selection. Here I summarize recent progress in RSA ideotypes as “design” and RSA-related gene resources as “materials” that will be needed in leveraging these technologies for the RSA breeding. I also highlight the future challenges to design-oriented breeding of RSA and explore solutions to these challenges.

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          Most cited references77

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          Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions.

          The genetic improvement of drought resistance is essential for stable and adequate crop production in drought-prone areas. Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle. DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity. Higher expression of DRO1 increases the root growth angle, whereby roots grow in a more downward direction. Introducing DRO1 into a shallow-rooting rice cultivar by backcrossing enabled the resulting line to avoid drought by increasing deep rooting, which maintained high yield performance under drought conditions relative to the recipient cultivar. Our experiments suggest that control of root system architecture will contribute to drought avoidance in crops.
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            The physiology of plant responses to drought

            Drought alone causes more annual loss in crop yield than all pathogens combined. To adapt to moisture gradients in soil, plants alter their physiology, modify root growth and architecture, and close stomata on their aboveground segments. These tissue-specific responses modify the flux of cellular signals, resulting in early flowering or stunted growth and, often, reduced yield. Physiological and molecular analyses of the model plant Arabidopsis thaliana have identified phytohormone signaling as key for regulating the response to drought or water insufficiency. Here we discuss how engineering hormone signaling in specific cells and cellular domains can facilitate improved plant responses to drought. We explore current knowledge and future questions central to the quest to produce high-yield, drought-resistant crops.
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              Salt Tolerance Mechanisms of Plants

              Crop loss due to soil salinization is an increasing threat to agriculture worldwide. This review provides an overview of cellular and physiological mechanisms in plant responses to salt. We place cellular responses in a time- and tissue-dependent context in order to link them to observed phases in growth rate that occur in response to stress. Recent advances in phenotyping can now functionally or genetically link cellular signaling responses, ion transport, water management, and gene expression to growth, development, and survival. Halophytes, which are naturally salt-tolerant plants, are highlighted as success stories to learn from. We emphasize that (a) filling the major knowledge gaps in salt-induced signaling pathways, (b) increasing the spatial and temporal resolution of our knowledge of salt stress responses, (c) discovering and considering crop-specific responses, and (d) including halophytes in our comparative studies are all essential in order to take our approaches to increasing crop yields in saline soils to the next level.
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                Author and article information

                Journal
                Breed Sci
                Breed Sci
                jsbbs
                Breeding Science
                Japanese Society of Breeding
                1344-7610
                1347-3735
                February 2021
                6 January 2021
                : 71
                : 1
                : 3-12
                Affiliations
                [1 ] Institute of Crop Science, National Agriculture and Food Research Organization , Kannondai, Tsukuba, Ibaraki 305-8518, Japan
                Author notes
                [* ]Corresponding author (e-mail: yuga@ 123456affrc.go.jp )

                Communicated by Mikio Nakazono

                Article
                JST.JSTAGE/jsbbs/20118 20118
                10.1270/jsbbs.20118
                7973499
                33762871
                0d591178-387e-438c-a4e1-41e5eaeb9256
                Copyright © 2021 by JAPANESE SOCIETY OF BREEDING

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 31 August 2020
                : 18 October 2020
                Categories
                Invited Review

                Animal agriculture
                dro1,edaphic stress,qsor1,qtl,root plasticity,root robustness
                Animal agriculture
                dro1, edaphic stress, qsor1, qtl, root plasticity, root robustness

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