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      Accurate Imputation of Greenhouse Environment Data for Data Integrity Utilizing Two-Dimensional Convolutional Neural Networks

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          Abstract

          Greenhouses require accurate and reliable data to interpret the microclimate and maximize resource use efficiency. However, greenhouse conditions are harsh for electrical sensors collecting environmental data. Convolutional neural networks (ConvNets) enable complex interpretation by multiplying the input data. The objective of this study was to impute missing tabular data collected from several greenhouses using a ConvNet architecture called U-Net. Various data-loss conditions with errors in individual sensors and in all sensors were assumed. The U-Net with a screen size of 50 exhibited the highest coefficient of determination values and the lowest root-mean-square errors for all environmental factors used in this study. U-Net 50 correctly learned the changing patterns of the greenhouse environment from the training dataset. Therefore, the U-Net architecture can be used for the imputation of tabular data in greenhouses if the model is correctly trained. Growers can secure data integrity with imputed data, which could increase crop productivity and quality in greenhouses.

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          Most cited references43

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          Deep learning.

          Deep learning allows computational models that are composed of multiple processing layers to learn representations of data with multiple levels of abstraction. These methods have dramatically improved the state-of-the-art in speech recognition, visual object recognition, object detection and many other domains such as drug discovery and genomics. Deep learning discovers intricate structure in large data sets by using the backpropagation algorithm to indicate how a machine should change its internal parameters that are used to compute the representation in each layer from the representation in the previous layer. Deep convolutional nets have brought about breakthroughs in processing images, video, speech and audio, whereas recurrent nets have shone light on sequential data such as text and speech.
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            Deep learning in neural networks: An overview

            In recent years, deep artificial neural networks (including recurrent ones) have won numerous contests in pattern recognition and machine learning. This historical survey compactly summarizes relevant work, much of it from the previous millennium. Shallow and Deep Learners are distinguished by the depth of their credit assignment paths, which are chains of possibly learnable, causal links between actions and effects. I review deep supervised learning (also recapitulating the history of backpropagation), unsupervised learning, reinforcement learning & evolutionary computation, and indirect search for short programs encoding deep and large networks.
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              Improved protein structure prediction using potentials from deep learning

              Protein structure prediction can be used to determine the three-dimensional shape of a protein from its amino acid sequence1. This problem is of fundamental importance as the structure of a protein largely determines its function2; however, protein structures can be difficult to determine experimentally. Considerable progress has recently been made by leveraging genetic information. It is possible to infer which amino acid residues are in contact by analysing covariation in homologous sequences, which aids in the prediction of protein structures3. Here we show that we can train a neural network to make accurate predictions of the distances between pairs of residues, which convey more information about the structure than contact predictions. Using this information, we construct a potential of mean force4 that can accurately describe the shape of a protein. We find that the resulting potential can be optimized by a simple gradient descent algorithm to generate structures without complex sampling procedures. The resulting system, named AlphaFold, achieves high accuracy, even for sequences with fewer homologous sequences. In the recent Critical Assessment of Protein Structure Prediction5 (CASP13)-a blind assessment of the state of the field-AlphaFold created high-accuracy structures (with template modelling (TM) scores6 of 0.7 or higher) for 24 out of 43 free modelling domains, whereas the next best method, which used sampling and contact information, achieved such accuracy for only 14 out of 43 domains. AlphaFold represents a considerable advance in protein-structure prediction. We expect this increased accuracy to enable insights into the function and malfunction of proteins, especially in cases for which no structures for homologous proteins have been experimentally determined7.
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                Author and article information

                Contributors
                Role: Academic Editor
                Journal
                Sensors (Basel)
                Sensors (Basel)
                sensors
                Sensors (Basel, Switzerland)
                MDPI
                1424-8220
                20 March 2021
                March 2021
                : 21
                : 6
                : 2187
                Affiliations
                [1 ]Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Korea; ataraxno@ 123456snu.ac.kr
                [2 ]Department of Smart Agriculture, Jeonju University, Jeonju 55069, Korea; jweee2@ 123456jj.ac.kr
                [3 ]Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea
                Author notes
                [* ]Correspondence: sjeenv@ 123456snu.ac.kr ; Tel.: +82-2-880-4564; Fax: +82-2-873-2056
                Author information
                https://orcid.org/0000-0002-1593-7870
                https://orcid.org/0000-0002-0080-0417
                Article
                sensors-21-02187
                10.3390/s21062187
                8003888
                0c99b00d-b078-44de-9055-e14b302d5aa3
                © 2021 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 21 January 2021
                : 18 March 2021
                Categories
                Article

                Biomedical engineering
                artificial intelligence,deep learning,interpolation,machine learning,plant environment

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