Sarah A. Nadeau: Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole:
MethodologyRole: SoftwareRole: ValidationRole: VisualizationRole: Writing - original
draftRole: Writing - review & editing
Timothy G. Vaughan: Role: Formal analysisRole: MethodologyRole: SoftwareRole: Visualization
Christiane Beckmann:
ORCID: https://orcid.org/0000-0001-9030-083X
Role: Resources
Ivan Topolsky:
ORCID: https://orcid.org/0000-0002-7561-0810
Role: Data curationRole: SoftwareRole: ValidationRole: Writing - review & editing
Chaoran Chen:
ORCID: https://orcid.org/0000-0002-8763-2937
Role: Data curationRole: Software
Emma Hodcroft:
ORCID: https://orcid.org/0000-0002-0078-2212
Role: ConceptualizationRole: Writing - review & editing
Tobias Schär: Role: Resources
Ina Nissen: Role: Investigation
Natascha Santacroce: Role: Validation
Elodie Burcklen: Role: Investigation
Pedro Ferreira:
ORCID: https://orcid.org/0000-0003-0559-6125
Role: Software
Kim Philipp Jablonski:
ORCID: https://orcid.org/0000-0002-4166-4343
Role: SoftwareRole: Validation
Susana Posada-Céspedes:
ORCID: https://orcid.org/0000-0002-7459-8186
Role: ResourcesRole: SoftwareRole: Writing - review & editing
Vincenzo Capece: Role: Software
Sophie Seidel:
ORCID: https://orcid.org/0000-0002-4484-9888
Role: Data curationRole: InvestigationRole: Methodology
Noemi Santamaria de Souza:
ORCID: https://orcid.org/0000-0001-7134-7480
Role: Data curationRole: InvestigationRole: Software
Phil Cheng:
ORCID: https://orcid.org/0000-0003-2940-006X
Role: InvestigationRole: Resources
Philipp P. Bosshard:
ORCID: https://orcid.org/0000-0002-1154-2281
Role: ConceptualizationRole: ResourcesRole: ValidationRole: Writing - review & editing
Mitchell P. Levesque:
ORCID: https://orcid.org/0000-0001-5902-9420
Role: Data curationRole: Funding acquisitionRole: ResourcesRole: SupervisionRole:
VisualizationRole: Writing - review & editing
Verena Kufner:
ORCID: https://orcid.org/0000-0003-4233-5952
Role: InvestigationRole: Writing - review & editing
Stefan Schmutz:
ORCID: https://orcid.org/0000-0002-1955-7007
Role: Investigation
Maryam Zaheri:
ORCID: https://orcid.org/0000-0003-2777-835X
Role: InvestigationRole: Writing - review & editing
Michael Huber:
ORCID: https://orcid.org/0000-0002-0384-0000
Role: Data curationRole: InvestigationRole: Resources
Alexandra Trkola:
ORCID: https://orcid.org/0000-0003-1013-876X
Role: InvestigationRole: Resources
Samuel Cordey:
ORCID: https://orcid.org/0000-0002-2684-5680
Role: Writing - review & editing
Florian Laubscher:
ORCID: https://orcid.org/0000-0002-8803-981X
Role: Data curationRole: Formal analysis
Ana Rita Gonçalves:
ORCID: https://orcid.org/0000-0002-7893-0158
Role: Data curationRole: InvestigationRole: ResourcesRole: Writing - review & editing
Sébastien Aeby:
ORCID: https://orcid.org/0000-0001-9726-7438
Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole:
MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole: ValidationRole:
Writing - original draft
Trestan Pillonel:
ORCID: https://orcid.org/0000-0002-5725-7929
Role: Data curationRole: InvestigationRole: ResourcesRole: Writing - review & editing
Damien Jacot: Role: InvestigationRole: ResourcesRole: Validation
Claire Bertelli:
ORCID: https://orcid.org/0000-0003-0550-8981
Role: Data curationRole: InvestigationRole: ResourcesRole: Writing - review & editing
Gilbert Greub:
ORCID: https://orcid.org/0000-0001-9529-3317
Role: Data curationRole: Formal analysisRole: InvestigationRole: Project administrationRole:
ResourcesRole: ValidationRole: Writing - review & editing
Karoline Leuzinger:
ORCID: https://orcid.org/0000-0002-5654-9356
Role: Data curationRole: Formal analysisRole: InvestigationRole: ResourcesRole: ValidationRole:
Writing - review & editing
Madlen Stange:
ORCID: https://orcid.org/0000-0002-4559-2535
Role: Investigation
Alfredo Mari:
ORCID: https://orcid.org/0000-0002-3871-088X
Role: Formal analysisRole: SoftwareRole: Validation
Tim Roloff:
ORCID: https://orcid.org/0000-0003-3435-4723
Role: InvestigationRole: Resources
Helena Seth-Smith: Role: Data curationRole: MethodologyRole: ResourcesRole: ValidationRole: Writing -
review & editing
Hans H. Hirsch: Role: ConceptualizationRole: ResourcesRole: Writing - original draftRole: Writing
- review & editing
Adrian Egli:
ORCID: https://orcid.org/0000-0002-3564-8603
Role: Data curationRole: Resources
Maurice Redondo: Role: ConceptualizationRole: Data curationRole: InvestigationRole: MethodologyRole:
Project administrationRole: ResourcesRole: Validation
Olivier Kobel: Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
ResourcesRole: Software
Christoph Noppen:
ORCID: https://orcid.org/0000-0001-8953-3417
Role: ConceptualizationRole: InvestigationRole: MethodologyRole: Resources
Louis du Plessis:
ORCID: https://orcid.org/0000-0003-0352-6289
Role: MethodologyRole: Writing - review & editing
Niko Beerenwinkel:
ORCID: https://orcid.org/0000-0002-0573-6119
Role: Formal analysisRole: InvestigationRole: SupervisionRole: Writing - review &
editing
Richard A. Neher:
ORCID: https://orcid.org/0000-0003-2525-1407
Role: Conceptualization
Christian Beisel:
ORCID: https://orcid.org/0000-0001-5360-2193
Role: Data curationRole: InvestigationRole: MethodologyRole: Project administrationRole:
ResourcesRole: Writing - review & editing
Tanja Stadler:
ORCID: https://orcid.org/0000-0001-6431-535X
Role: ConceptualizationRole: Data curationRole: Funding acquisitionRole: InvestigationRole:
MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole: ValidationRole:
VisualizationRole: Writing - original draftRole: Writing - review & editing
Journal ID (nlm-ta): Sci Transl Med
Journal ID (iso-abbrev): Sci Transl Med
Journal ID (publisher-id): stm
Journal ID (hwp): scitranslmed
Title:
Science Translational Medicine
Publisher:
American Association for the Advancement of Science
ISSN
(Print):
1946-6234
ISSN
(Electronic):
1946-6242
Publication date
(Electronic, pub):
08
November
2022
Publication date PMC-release: 08
November
2022
Volume: 14
Electronic Location Identifier: eabn7979
Affiliations
[
1
]Department of Biosystems Science and Engineering, ETH Zurich; 4058, Basel, Switzerland.
[
2
]SIB Swiss Institute of Bioinformatics; 1015, Lausanne, Switzerland.
[
3
]Viollier AG; 4123, Allschwil, Switzerland.
[
4
]Institute for Social and Preventive Medicine, University of Bern; 3012, Bern, Switzerland.
[
5
]Department of Biology, ETH Zurich; 8092, Zurich, Switzerland.
[
6
]Department of Dermatology, University Hospital Zurich, University of Zurich; 8091,
Zurich, Switzerland.
[
7
]Institute of Medical Virology, University of Zurich; 8057, Zurich, Switzerland.
[
8
]Laboratory of Virology, Department of Diagnostics, Geneva University Hospitals & Faculty
of Medicine; 1205, Geneva, Switzerland.
[
9
]Swiss National Reference Centre for Influenza, University Hospitals of Geneva; 1205,
Geneva, Switzerland.
[
10
]Institute of Microbiology, University Hospital Centre and University of Lausanne;
1011, Lausanne, Switzerland.
[
11
]Division of Clinical Virology, University Hospital Basel; 4051, Basel, Switzerland.
[
12
]Department of Biomedicine, University of Basel; 4031, Basel, Switzerland.
[
13
]Division of Clinical Bacteriology and Mycology, University Hospital Basel; 4031, Basel,
Switzerland.
[
14
]Biozentrum, University of Basel; 4056, Basel, Switzerland.
Author notes
Author information
Article
Publisher ID:
abn7979
DOI: 10.1126/scitranslmed.abn7979
PMC ID: 9765449
PubMed ID: 36346321
SO-VID: 0a6bb447-ad70-4b62-9bd7-472462945556
Copyright © Copyright © 2022 The Authors, some rights reserved; exclusive licensee American Association
for the Advancement of Science. No claim to original U.S. Government Works. Distributed
under a Creative Commons Attribution License 4.0 (CC BY).
License:
This is an open-access article distributed under the terms of the
Creative Commons Attribution license, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original work is properly cited.
Funded by:
FundRef http://dx.doi.org/10.13039/501100001711, Swiss National Science Foundation;
Award ID: 31CA30_196267
Funded by:
ETH Zurich;