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      Evolution of the Northern Rockweed, Fucus distichus, in a Regime of Glacial Cycling: Implications for Benthic Algal Phylogenetics

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          Abstract

          Northern hemisphere rockweeds ( Fucus) are thought to have evolved in the North Pacific and then spread to the North Atlantic following the opening of the Bering Strait. They have dispersed and widely speciated in the North Atlantic and its tributary seas. Fucus distichus is likely near the ancestral member of this genus, and studies have shown that there are several species/subspecies in this complex (i.e. F. evanescens and F. gardneri). We used phylogenetic and haplotype analyses to test the phylogenetic relationships and biogeography of F. distichus. Our data and subsequent analyses demonstrate that, unlike previous studies that lacked samples from an extensive geographical area of the Arctic and Subarctic, there is a distinct Arctic haplotype that is the source of subspecies in both the North Pacific and North Atlantic. Fucus distichus occupies a low tide zone habitat, and in Arctic/Subarctic regions it is adapted to the severe stress of sea ice coverage and disturbance during many months per year. We hypothesize that the very large geographic area of Arctic and Subarctic rocky shores available to this species during interglacials, supported by large Arctic/Subarctic fringe areas as well as unglaciated refugia during glacial cycles, provided a robust population and gene pool (described by the Thermogeographic Model). This gene pool dilutes that of the more fragmented and area-limited Temperate/Boreal area populations when they are brought together during glacial cycles. We suggest that similar subspecies complexes for a variety of Arctic/Subarctic shore biota should be examined further in this context, rather than arbitrarily being split up into numerous species.

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          A Survey of Combinatorial Methods for Phylogenetic Networks

          The evolutionary history of a set of species is usually described by a rooted phylogenetic tree. Although it is generally undisputed that bifurcating speciation events and descent with modifications are major forces of evolution, there is a growing belief that reticulate events also have a role to play. Phylogenetic networks provide an alternative to phylogenetic trees and may be more suitable for data sets where evolution involves significant amounts of reticulate events, such as hybridization, horizontal gene transfer, or recombination. In this article, we give an introduction to the topic of phylogenetic networks, very briefly describing the fundamental concepts and summarizing some of the most important combinatorial methods that are available for their computation.
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            Arctic biogeography: The paradox of the marine benthic fauna and flora.

            K Dunton (1992)
            The marine benthic fauna and flora that inhabit the shallow arctic sublittoral zone comprise a relatively young marine assemblage characterized by species of either Pacific or Atlantic affinity and notably few endemics. The young character of nearshore arctic communities, as well as their biogeographical composition, is largely a product of the Pleistocene glaciation. However, analysis of more recent collections and comparison between the origins of the benthic fauna and flora present some interesting paradoxes to biogeographers. One enigma is the low frequency of algal species with Pacific affinities in the Arctic, especially in the Chukchi, Beaufort and East Siberian Seas of the Eastern Arctic, which receive direct inputs of northward-flowing Pacific waters. In contrast, animal species with Pacific affinities are found throughout the nearshore regions of the Arctic, reaching their highest frequency in the marginal seas between the New Siberian Islands and the Canadian Archipelago. Organization of published and unpublished data, additional field collections, and the use of cladistics and molecular DNA techniques by systematists are a high priority for future research in reconstructing the evolution of the arctic biotic assemblage. Copyright © 1992. Published by Elsevier Ltd.
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              Evidence for warmer interglacials in East Antarctic ice cores.

              Stable isotope ratios of oxygen and hydrogen in the Antarctic ice core record have revolutionized our understanding of Pleistocene climate variations and have allowed reconstructions of Antarctic temperature over the past 800,000 years (800 kyr; refs 1, 2). The relationship between the D/H ratio of mean annual precipitation and mean annual surface air temperature is said to be uniform +/-10% over East Antarctica and constant with time +/-20% (refs 3-5). In the absence of strong independent temperature proxy evidence allowing us to calibrate individual ice cores, prior general circulation model (GCM) studies have supported the assumption of constant uniform conversion for climates cooler than that of the present day. Here we analyse the three available 340 kyr East Antarctic ice core records alongside input from GCM modelling. We show that for warmer interglacial periods the relationship between temperature and the isotopic signature varies among ice core sites, and that therefore the conversions must be nonlinear for at least some sites. Model results indicate that the isotopic composition of East Antarctic ice is less sensitive to temperature changes during warmer climates. We conclude that previous temperature estimates from interglacial climates are likely to be too low. The available evidence is consistent with a peak Antarctic interglacial temperature that was at least 6 K higher than that of the present day -approximately double the widely quoted 3 +/- 1.5 K (refs 5, 6).
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                2 December 2015
                2015
                : 10
                : 12
                : e0143795
                Affiliations
                [1 ]Department of Botany, MRC-166, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013–7012, United States of America
                [2 ]Department of Biology, University of Waterloo, Waterloo, ON, N2T 2T4, Canada
                [3 ]Centre for Protein Engineering, University of Liège, Sart-Tilman, B-4000 Liège, Belgium
                [4 ]Department of Botany and Laboratories of Analytical Biology, Smithsonian Institution Museum Support Center, Suitland, MD 20746 United States of America
                University of Pennsylvania, UNITED STATES
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Conceived and designed the experiments: HDL WHA KMM. Performed the experiments: HDL WHA KMM RY GJ YL. Analyzed the data: HDL WHA KMM YL RY. Contributed reagents/materials/analysis tools: WHA KMM. Wrote the paper: HDL WHA KMM RY YL GJ.

                [¤]

                Current address: Department of Arctic Biology, University Centre in Svalbard, Pb 156, 9171 Longyearbyen, Svalbard, Norway

                ‡ These authors are joint first authors on this work.

                Article
                PONE-D-15-03432
                10.1371/journal.pone.0143795
                4668022
                26630571
                08cdda79-c011-46e5-b81f-e1cb26d2b060

                This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication

                History
                : 6 February 2015
                : 10 November 2015
                Page count
                Figures: 3, Tables: 1, Pages: 17
                Funding
                Research by K. Muller was supported by an National Science and Engineering Research Council of Canada (NSERC) Discovery grant: http://www.nserc-crsng.gc.ca/Professors-Professeurs/Grants-Subs/DGIGP-PSIGP_eng.asp, Grant Number -RGPin 238619-2012 32709. W. Adey received internal funding from the Dept. of Botany, Smithsonian Institution for DNA extraction and sequencing and H.D. Laughinghouse IV was funded by grants from Statoil and FRS-FNRS during different parts of this study. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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                Research Article
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                GenBank is at the URL: http://www.ncbi.nlm.nih.gov/genbank/ and the accession numbers are in Table 1 (this is noted on page four of the manuscript). The Treebase site is: http://treebase.org/treebase-web/home.html and the submission ID for Treebase is 18483.

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