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      Evaluating antimicrobial resistance in the global shrimp industry

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          Abstract

          Antimicrobial resistance ( AMR) is a growing threat to global public health, and the overuse of antibiotics in animals has been identified as a major risk factor. With high levels of international trade and direct connectivity to the aquatic environment, shrimp aquaculture may play a role in global AMR dissemination. The vast majority of shrimp production occurs in low‐ and middle‐income countries, where antibiotic quality and usage is widely unregulated, and where the integration of aquaculture with family livelihoods offers many opportunities for human, animal and environmental bacteria to come into close contact. Furthermore, in shrimp growing areas, untreated waste is often directly eliminated into local water sources. These risks are very different to many other major internationally‐traded aquaculture commodities, such as salmon, which is produced in higher income countries where there are greater levels of regulation and well‐established management practices. Assessing the true scale of the risk of AMR dissemination in the shrimp industry is a considerable challenge, not least because obtaining reliable data on antibiotic usage is very difficult. Combating the risks associated with AMR dissemination is also challenging due to the increasing trend towards intensification and its associated disease burden, and because many farmers currently have no alternatives to antibiotics for preventing crop failure. In this review, we critically assess the potential risks the shrimp industry poses to AMR dissemination. We also discuss some of the possible risk mitigation strategies that could be considered by the shrimp industry as it strives for a more sustainable future in production.

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          Global increase and geographic convergence in antibiotic consumption between 2000 and 2015

          Significance Antibiotic resistance, driven by antibiotic consumption, is a growing global health threat. Our report on antibiotic use in 76 countries over 16 years provides an up-to-date comprehensive assessment of global trends in antibiotic consumption. We find that the antibiotic consumption rate in low- and middle-income countries (LMICs) has been converging to (and in some countries surpassing) levels typically observed in high-income countries. However, inequities in drug access persist, as many LMICs continue to be burdened with high rates of infectious disease-related mortality and low rates of antibiotic consumption. Our findings emphasize the need for global surveillance of antibiotic consumption to support policies to reduce antibiotic consumption and resistance while providing access to these lifesaving drugs.
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            What is a resistance gene? Ranking risk in resistomes.

            Metagenomic studies have shown that antibiotic resistance genes are ubiquitous in the environment, which has led to the suggestion that there is a high risk that these genes will spread to bacteria that cause human infections. If this is true, estimating the real risk of dissemination of resistance genes from environmental reservoirs to human pathogens is therefore very difficult. In this Opinion article, we analyse the current definitions of antibiotic resistance and antibiotic resistance genes, and we describe the bottlenecks that affect the transfer of antibiotic resistance genes to human pathogens. We propose rules for estimating the risks associated with genes that are present in environmental resistomes by evaluating the likelihood of their introduction into human pathogens, and the consequences of such events for the treatment of infections.
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              Anthropological and socioeconomic factors contributing to global antimicrobial resistance: a univariate and multivariable analysis

              Understanding of the factors driving global antimicrobial resistance is limited. We analysed antimicrobial resistance and antibiotic consumption worldwide versus many potential contributing factors.
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                Author and article information

                Contributors
                k.thornber@exeter.ac.uk
                c.r.tyler@exeter.ac.uk
                Journal
                Rev Aquac
                Rev Aquac
                10.1111/(ISSN)1753-5131
                RAQ
                Reviews in Aquaculture
                John Wiley and Sons Inc. (Hoboken )
                1753-5123
                1753-5131
                08 July 2019
                May 2020
                : 12
                : 2 ( doiID: 10.1111/raq.v12.2 )
                : 966-986
                Affiliations
                [ 1 ] Centre for Sustainable Aquaculture Futures University of Exeter Exeter UK
                [ 2 ] Biosciences University of Exeter Exeter UK
                [ 3 ] Centre for Environment, Fisheries and Aquaculture Science Weymouth UK
                [ 4 ] Department of Geography University of Exeter Exeter UK
                [ 5 ] Worldfish Bangladesh World Fish Bangladesh Office Dhaka Bangladesh
                Author notes
                [*] [* ] Correspondence

                Dr Kelly Thornber and Professor Charles R. Tyler, Biosciences, University of Exeter, Geoffrey Pope Building, Stocker Road, Exeter EX4 4QD, UK. Emails: k.thornber@ 123456exeter.ac.uk and c.r.tyler@ 123456exeter.ac.uk

                Author information
                https://orcid.org/0000-0003-0484-8458
                Article
                RAQ12367
                10.1111/raq.12367
                7319481
                32612676
                0693f9f0-60bc-4546-ac8c-44d10b0b2265
                © 2019 The Authors. Reviews in Aquaculture Published by John Wiley & Sons Australia, Ltd

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 01 February 2019
                : 05 June 2019
                Page count
                Figures: 6, Tables: 0, Pages: 21, Words: 14826
                Funding
                Funded by: BBSRC‐funded Daphne Jackson Fellowship , open-funder-registry 10.13039/501100000268;
                Funded by: CGIAR Research Program on Fish Agri‐food Systems (FISH)
                Funded by: Biotechnology and Biological Sciences Research Council‐Newton Babba
                Award ID: BB/N00504X/1
                Funded by: Economic and Social Research Council , open-funder-registry 10.13039/501100000269;
                Award ID: ES/P004008/1
                Categories
                Review
                Review Articles
                Custom metadata
                2.0
                May 2020
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.8.4 mode:remove_FC converted:26.06.2020

                antibiotics,antimicrobial resistance,aquaculture,international trade,low and middle income countries,shrimp

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