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      Vocal complexity in the long calls of Bornean orangutans

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          Abstract

          Vocal complexity is central to many evolutionary hypotheses about animal communication. Yet, quantifying and comparing complexity remains a challenge, particularly when vocal types are highly graded. Male Bornean orangutans ( Pongo pygmaeus wurmbii) produce complex and variable “long call” vocalizations comprising multiple sound types that vary within and among individuals. Previous studies described six distinct call (or pulse) types within these complex vocalizations, but none quantified their discreteness or the ability of human observers to reliably classify them. We studied the long calls of 13 individuals to: (1) evaluate and quantify the reliability of audio-visual classification by three well-trained observers, (2) distinguish among call types using supervised classification and unsupervised clustering, and (3) compare the performance of different feature sets. Using 46 acoustic features, we used machine learning ( i.e., support vector machines, affinity propagation, and fuzzy c-means) to identify call types and assess their discreteness. We additionally used Uniform Manifold Approximation and Projection (UMAP) to visualize the separation of pulses using both extracted features and spectrogram representations. Supervised approaches showed low inter-observer reliability and poor classification accuracy, indicating that pulse types were not discrete. We propose an updated pulse classification approach that is highly reproducible across observers and exhibits strong classification accuracy using support vector machines. Although the low number of call types suggests long calls are fairly simple, the continuous gradation of sounds seems to greatly boost the complexity of this system. This work responds to calls for more quantitative research to define call types and quantify gradedness in animal vocal systems and highlights the need for a more comprehensive framework for studying vocal complexity vis-à-vis graded repertoires.

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          The Measurement of Observer Agreement for Categorical Data

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            Observational Study of Behavior: Sampling Methods

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              Computing Inter-Rater Reliability for Observational Data: An Overview and Tutorial.

              Many research designs require the assessment of inter-rater reliability (IRR) to demonstrate consistency among observational ratings provided by multiple coders. However, many studies use incorrect statistical procedures, fail to fully report the information necessary to interpret their results, or do not address how IRR affects the power of their subsequent analyses for hypothesis testing. This paper provides an overview of methodological issues related to the assessment of IRR with a focus on study design, selection of appropriate statistics, and the computation, interpretation, and reporting of some commonly-used IRR statistics. Computational examples include SPSS and R syntax for computing Cohen's kappa and intra-class correlations to assess IRR.
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                Author and article information

                Contributors
                Journal
                PeerJ
                PeerJ
                peerj
                PeerJ
                PeerJ Inc. (San Diego, USA )
                2167-8359
                14 May 2024
                2024
                : 12
                : e17320
                Affiliations
                [1 ]K. Lisa Yang Center for Conservation Bioacoustics, Cornell Lab of Ornithology, Cornell University , Ithaca, NY, United States of America
                [2 ]Department of Anthropology, Rutgers, The State University of New Jersey , New Brunswick, United States of America
                [3 ]Primate Research Center, Universitas Nasional Jakarta , Jakarta, Indonesia
                [4 ]Department of Biology, Faculty of Biology and Agriculture, Universitas Nasional Jakarta , Jakarta, Indonesia
                [5 ]Centre for Marine Science and Technology, Curtin University , Perth, Australia
                Article
                17320
                10.7717/peerj.17320
                11100477
                38766489
                059d3431-cfd0-410c-8799-e4e233f9a50d
                ©2024 Erb et al.

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.

                History
                : 11 April 2023
                : 9 April 2024
                Funding
                Funded by: Rutgers University
                Funded by: The Center for Human Evolutionary Studies
                Funded by: USAID
                Award ID: No. AID-497-A-13-00005
                Funded by: The American Association of University Women
                This work was supported by Rutgers University (to Erin Vogel), The Center for Human Evolutionary Studies (to Erin Vogel), USAID (No. AID-497-A-13-00005: to Erin Vogel, Robert Scott, Jito Sugardjito), and the American Association of University Women (to Wendy M Erb). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Animal Behavior
                Anthropology

                acoustic communication,affinity propagation,fuzzy clustering,graded signals,machine learning,supervised classification,support vector machines,uniform manifold approximation and projection (umap),unsupervised clustering,vocal repertoire

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