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      Purification and proteomic analysis of potent fibrinolytic enzymes extracted from Lumbricus rubellus

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          Abstract

          Background

          Lumbrokinase derived from earthworms, Lumbricus rubellus is known to have fibrinolytic enzymes that have potential as therapeutic drugs due to its ability to dissolve fibrin. The current study is aimed to purify the Lumbrokinase from L. rubellus and identify its protein component.

          Methods

          Water extract of local earthworm Lumbricus rubellus revealed several proteins. Therefore, to identify its protein component, purification through HiPrep DEAE fast flow and proteomic analysis were conducted prior to identifications. A combination of two-dimension gel electrophoresis (2DE) and electrospray ionization mass spectrometry analysis was used to identify the purified fractions.

          Results

          The purified fractions contain five protein bands, namely F25-1, F25-2, F85-1, F85-2, and F85-3, which displayed strong fibrinogenolytic activity. F25 fractions showed fibrinogenolytic activity of 974.85 U/mg, while F85 fractions showed higher activity of 1,484.11 U/mg. Fractions F85-1, F85-2, and F85-3 showed molecular weights of 42.6 kDa, 27.03 kDa, and 14 kDa, respectively and were identified as Lumbrokinase iso-enzymes.

          Conclusion

          This preliminary study indicates that the F25 and F85 fractions are similar to published fibrinolytic protease-1 and lumbrokinase, respectively, in terms of their amino acid sequence.

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          Most cited references35

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          Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

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            PROTEIN MEASUREMENT WITH THE FOLIN PHENOL REAGENT

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              Proteomic analysis of the venom of Heterometrus longimanus (Asian black scorpion).

              Venoms have evolved over millions of years into potent cocktails of bioactive peptides and proteins. These compounds can be of great value to the pharmaceutical industry for numerous clinical applications. In this study, a novel proteomic - bioinformatic approach was utilised, where chromatography followed by gel electrophoresis was utilised to separate the venom peptides/proteins of Heterometrus longimanus (Asian black scorpion). Purified peptides were analysed by tandem mass spectrometry, de novo sequenced and then homology matched against known peptides in the Swiss-Prot protein database. Numerous potentially biologically active peptide matches were discovered, and a simple scoring system applied to putatively assign functions to the peptides. As a validation of this approach, the functional composition of the experimentally derived proteome is similar to that of other scorpions, and contains a potent mix of toxins, antimicrobials and ionic channel inhibitors.
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                Author and article information

                Contributors
                raymond@dexa-medica.com
                Journal
                Proteome Sci
                Proteome Sci
                Proteome Science
                BioMed Central (London )
                1477-5956
                8 May 2023
                8 May 2023
                2023
                : 21
                : 8
                Affiliations
                [1 ]Biopharmaceutical Technology Division, Research Innovation and Invention, Dexa Laboratories of Biomolecular Sciences, PT Dexa Medica, Kawasan Industri Jababeka II, Industri Selatan V Block PP No. 7, Cikarang, 17550 Indonesia
                [2 ]GRID grid.434933.a, ISNI 0000 0004 1808 0563, Research Group of Pharmaceutics, School of Pharmacy, , Bandung Institute of Technology, ; Bandung, Indonesia
                [3 ]GRID grid.440754.6, ISNI 0000 0001 0698 0773, Department of Food Science and Technology, , Bogor Agricultural University, Fateta Building, Kampus IPB Darmaga, ; Bogor, Indonesia
                [4 ]GRID grid.443450.2, ISNI 0000 0001 2288 786X, Faculty of Biotechnology, , Atma Jaya Catholic University of Indonesia, ; Jalan Raya Cisauk-Lapan No. 10, Tangerang, 15345 Indonesia
                Article
                206
                10.1186/s12953-023-00206-9
                10165752
                37158880
                04723e37-4b62-497a-a2c2-349deb978fe2
                © The Author(s) 2023

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 8 November 2022
                : 16 April 2023
                Categories
                Research
                Custom metadata
                © BioMed Central Ltd., part of Springer Nature 2023

                Molecular biology
                dlbs1033,earthworms fibrinolytic enzyme,lumbrokinase,lumbricus rubellus,protein purification

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