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      Metal-coding assisted serological multi-omics profiling deciphers the role of selenium in COVID-19 immunity†

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          Abstract

          Uncovering how host metal(loid)s mediate the immune response against invading pathogens is critical for better understanding the pathogenesis mechanism of infectious disease. Clinical data show that imbalance of host metal(loid)s is closely associated with the severity and mortality of COVID-19. However, it remains elusive how metal(loid)s, which are essential elements for all forms of life and closely associated with multiple diseases if dysregulated, are involved in COVID-19 pathophysiology and immunopathology. Herein, we built up a metal-coding assisted multiplexed serological metallome and immunoproteome profiling system to characterize the links of metallome with COVID-19 pathogenesis and immunity. We found distinct metallome features in COVID-19 patients compared with non-infected control subjects, which may serve as a biomarker for disease diagnosis. Moreover, we generated the first correlation network between the host metallome and immunity mediators, and unbiasedly uncovered a strong association of selenium with interleukin-10 (IL-10). Supplementation of selenium to immune cells resulted in enhanced IL-10 expression in B cells and reduced induction of proinflammatory cytokines in B and CD4 + T cells. The selenium-enhanced IL-10 production in B cells was confirmed to be attributable to the activation of ERK and Akt pathways. We further validated our cellular data in SARS-CoV-2-infected K18-hACE2 mice, and found that selenium supplementation alleviated SARS-CoV-2-induced lung damage characterized by decreased alveolar inflammatory infiltrates through restoration of virus-repressed selenoproteins to alleviate oxidative stress. Our approach can be readily extended to other diseases to understand how the host defends against invading pathogens through regulation of metallome.

          Abstract

          Uncovering how host metal(loid)s mediate the immune response against invading pathogens is critical for better understanding the pathogenesis mechanism of infectious disease.

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          Most cited references40

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          A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster

          Summary Background An ongoing outbreak of pneumonia associated with a novel coronavirus was reported in Wuhan city, Hubei province, China. Affected patients were geographically linked with a local wet market as a potential source. No data on person-to-person or nosocomial transmission have been published to date. Methods In this study, we report the epidemiological, clinical, laboratory, radiological, and microbiological findings of five patients in a family cluster who presented with unexplained pneumonia after returning to Shenzhen, Guangdong province, China, after a visit to Wuhan, and an additional family member who did not travel to Wuhan. Phylogenetic analysis of genetic sequences from these patients were done. Findings From Jan 10, 2020, we enrolled a family of six patients who travelled to Wuhan from Shenzhen between Dec 29, 2019 and Jan 4, 2020. Of six family members who travelled to Wuhan, five were identified as infected with the novel coronavirus. Additionally, one family member, who did not travel to Wuhan, became infected with the virus after several days of contact with four of the family members. None of the family members had contacts with Wuhan markets or animals, although two had visited a Wuhan hospital. Five family members (aged 36–66 years) presented with fever, upper or lower respiratory tract symptoms, or diarrhoea, or a combination of these 3–6 days after exposure. They presented to our hospital (The University of Hong Kong-Shenzhen Hospital, Shenzhen) 6–10 days after symptom onset. They and one asymptomatic child (aged 10 years) had radiological ground-glass lung opacities. Older patients (aged >60 years) had more systemic symptoms, extensive radiological ground-glass lung changes, lymphopenia, thrombocytopenia, and increased C-reactive protein and lactate dehydrogenase levels. The nasopharyngeal or throat swabs of these six patients were negative for known respiratory microbes by point-of-care multiplex RT-PCR, but five patients (four adults and the child) were RT-PCR positive for genes encoding the internal RNA-dependent RNA polymerase and surface Spike protein of this novel coronavirus, which were confirmed by Sanger sequencing. Phylogenetic analysis of these five patients' RT-PCR amplicons and two full genomes by next-generation sequencing showed that this is a novel coronavirus, which is closest to the bat severe acute respiatory syndrome (SARS)-related coronaviruses found in Chinese horseshoe bats. Interpretation Our findings are consistent with person-to-person transmission of this novel coronavirus in hospital and family settings, and the reports of infected travellers in other geographical regions. Funding The Shaw Foundation Hong Kong, Michael Seak-Kan Tong, Respiratory Viral Research Foundation Limited, Hui Ming, Hui Hoy and Chow Sin Lan Charity Fund Limited, Marina Man-Wai Lee, the Hong Kong Hainan Commercial Association South China Microbiology Research Fund, Sanming Project of Medicine (Shenzhen), and High Level-Hospital Program (Guangdong Health Commission).
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            Extrapulmonary manifestations of COVID-19

            Although COVID-19 is most well known for causing substantial respiratory pathology, it can also result in several extrapulmonary manifestations. These conditions include thrombotic complications, myocardial dysfunction and arrhythmia, acute coronary syndromes, acute kidney injury, gastrointestinal symptoms, hepatocellular injury, hyperglycemia and ketosis, neurologic illnesses, ocular symptoms, and dermatologic complications. Given that ACE2, the entry receptor for the causative coronavirus SARS-CoV-2, is expressed in multiple extrapulmonary tissues, direct viral tissue damage is a plausible mechanism of injury. In addition, endothelial damage and thromboinflammation, dysregulation of immune responses, and maladaptation of ACE2-related pathways might all contribute to these extrapulmonary manifestations of COVID-19. Here we review the extrapulmonary organ-specific pathophysiology, presentations and management considerations for patients with COVID-19 to aid clinicians and scientists in recognizing and monitoring the spectrum of manifestations, and in developing research priorities and therapeutic strategies for all organ systems involved.
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              Dimensionality reduction for visualizing single-cell data using UMAP

              Advances in single-cell technologies have enabled high-resolution dissection of tissue composition. Several tools for dimensionality reduction are available to analyze the large number of parameters generated in single-cell studies. Recently, a nonlinear dimensionality-reduction technique, uniform manifold approximation and projection (UMAP), was developed for the analysis of any type of high-dimensional data. Here we apply it to biological data, using three well-characterized mass cytometry and single-cell RNA sequencing datasets. Comparing the performance of UMAP with five other tools, we find that UMAP provides the fastest run times, highest reproducibility and the most meaningful organization of cell clusters. The work highlights the use of UMAP for improved visualization and interpretation of single-cell data.
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                Author and article information

                Journal
                Chem Sci
                Chem Sci
                SC
                CSHCBM
                Chemical Science
                The Royal Society of Chemistry
                2041-6520
                2041-6539
                18 September 2023
                4 October 2023
                18 September 2023
                : 14
                : 38
                : 10570-10579
                Affiliations
                [a ] Department of Chemistry, State Key Laboratory of Synthetic Chemistry, CAS-HKU Joint Laboratory of Metallomics on Health and Environment, The University of Hong Kong Pokfulam Hong Kong SAR China hsun@ 123456hku.hk
                [b ] State Key Laboratory of Emerging Infectious Diseases, Carol Yu Centre for Infection, Department of Microbiology, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong Pokfulam Hong Kong SAR China jfwchan@ 123456hku.hk
                [c ] Department of Infectious Diseases and Microbiology, The University of Hong Kong-Shenzhen Hospital Shenzhen Guangdong China
                [d ] Centre for Virology, Vaccinology and Therapeutics, Hong Kong Science and Technology Park Hong Kong SAR China
                [e ] Department of Pathology, Shenzhen Institute of Research and Innovation, The University of Hong Kong Hong Kong SAR China
                [f ] School of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong Pokfulam Hong Kong SAR China
                [g ] Faculty of Dentistry, The University of Hong Kong Pokfulam Hong Kong SAR Hong Kong China
                [h ] Department of Microbiology, Queen Mary Hospital Pokfulam Hong Kong SAR China
                [i ] Division of Infectious Diseases, Department of Medicine, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong Pokfulam Hong Kong SAR China
                [j ] Academician Workstation of Hainan Province, Hainan Medical University-The University of Hong Kong Joint Laboratory of Tropical Infectious Diseases, The University of Hong Kong Pokfulam Hong Kong SAR China
                [k ] Guangzhou Laboratory Guangdong Province China
                Author notes
                [‡]

                These authors contributed equally as co-first authors.

                Author information
                https://orcid.org/0009-0009-6634-3149
                https://orcid.org/0000-0002-2554-7219
                https://orcid.org/0000-0002-5340-9710
                https://orcid.org/0000-0001-6336-6657
                https://orcid.org/0000-0001-6697-6899
                Article
                d3sc03345g
                10.1039/d3sc03345g
                10548515
                37799995
                03088d6a-d279-4629-bbba-45caaf739adf
                This journal is © The Royal Society of Chemistry
                History
                : 1 July 2023
                : 2 August 2023
                Page count
                Pages: 10
                Funding
                Funded by: Research Grants Council, University Grants Committee, doi 10.13039/501100002920;
                Award ID: C7060-21G
                Award ID: C7034-20EF
                Award ID: T11-709/21-N
                Award ID: 17318322
                Award ID: 2122-7S04
                Award ID: 17306323
                Funded by: Health and Medical Research Fund, doi 10.13039/501100005847;
                Award ID: 20190572
                Award ID: COVID1903010
                Funded by: Food and Health Bureau, doi 10.13039/501100005407;
                Award ID: Unassigned
                Funded by: Innovation and Technology Commission, doi 10.13039/501100003452;
                Award ID: Unassigned
                Funded by: National Key Research and Development Program of China, doi 10.13039/501100012166;
                Award ID: 2020YFA0707500
                Award ID: 2020YFA0707504
                Funded by: Sanming Project of Medicine in Shenzhen, doi 10.13039/501100012151;
                Award ID: SZSM201911014
                Funded by: High-level Hospital Construction Project of Guangdong Provincial People's Hospital, doi 10.13039/501100018609;
                Award ID: Unassigned
                Funded by: Major Science and Technology Project of Hainan Province, doi 10.13039/501100013072;
                Award ID: ZDKJ202003
                Funded by: Hong Kong Hainan Commercial Association, doi 10.13039/501100014818;
                Award ID: Unassigned
                Funded by: Lo Ying Shek Chi Wai Foundation, doi 10.13039/100018831;
                Award ID: Unassigned
                Funded by: University of Hong Kong, doi 10.13039/501100003803;
                Award ID: Unassigned
                Funded by: National Natural Science Foundation of China, doi 10.13039/501100001809;
                Award ID: General Program (82272337)
                Categories
                Chemistry
                Custom metadata
                Paginated Article

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