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      Generalized Hailey–Hailey disease: Novel splice‐site mutations of ATP2C1 gene in Chinese population and a literature review

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          Abstract

          Background

          Hailey–Hailey disease (HHD; OMIM: 169600) is an autosomal dominate genodermatosis, characterized by recurrent blisters and erosions clinically and remarkable acantholysis pathologically. The underlying pathogenic factor is the mutation of ATP2C1 gene (OMIM: 604384), which encodes secretory pathway Ca 2+/Mn 2+‐ATPase (SPCA1). Skin folds are the predilection site of HHD. Atypical cases with a generalized pattern have rarely been reported, making it prone to misdiagnosis.

          Methods

          In this study, we presented three Chinese pedigrees of Hailey–Hailey disease with generalized skin lesions. ATP2C1 mutations were screened by DNA sequencing and their transcripts were further confirmed by minigene assay. We also performed a literature review of previously published generalized HHD over past two decades together with our cases.

          Results

          Three splice‐site mutations were identified: c.2487+1G>A, c.2126+1G>A, and c.1891‐2A>G, which resulted in an exon 25‐truncated transcript, two exon 22‐truncated transcripts, and two exon 21‐truncated transcripts, respectively. The c.2487+1G>A and the c.1891‐2A>G mutations are novel mutations which have not been reported before. No clustered mutations of ATP2C1 gene were found in generalized HHD patients in literature along with our novel mutations.

          Conclusion

          We found no hot spot mutations in ATP2C1 correlated with the generalized pattern of HHD. Our study expanded the spectrum of ATP2C1 mutations, which would be useful for disease diagnosis and genetic counseling.

          Abstract

          The goal of our study was to explore the clinical and genetical features of generalized HHD. In our study, we identified three splice‐site mutations of ATP2C1 gene in three Chinese HHD pedigrees with generalized skin lesions, two of which have never been reported.

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          Most cited references39

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          Standards and Guidelines for the Interpretation of Sequence Variants: A Joint Consensus Recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology

          The American College of Medical Genetics and Genomics (ACMG) previously developed guidance for the interpretation of sequence variants. 1 In the past decade, sequencing technology has evolved rapidly with the advent of high-throughput next generation sequencing. By adopting and leveraging next generation sequencing, clinical laboratories are now performing an ever increasing catalogue of genetic testing spanning genotyping, single genes, gene panels, exomes, genomes, transcriptomes and epigenetic assays for genetic disorders. By virtue of increased complexity, this paradigm shift in genetic testing has been accompanied by new challenges in sequence interpretation. In this context, the ACMG convened a workgroup in 2013 comprised of representatives from the ACMG, the Association for Molecular Pathology (AMP) and the College of American Pathologists (CAP) to revisit and revise the standards and guidelines for the interpretation of sequence variants. The group consisted of clinical laboratory directors and clinicians. This report represents expert opinion of the workgroup with input from ACMG, AMP and CAP stakeholders. These recommendations primarily apply to the breadth of genetic tests used in clinical laboratories including genotyping, single genes, panels, exomes and genomes. This report recommends the use of specific standard terminology: ‘pathogenic’, ‘likely pathogenic’, ‘uncertain significance’, ‘likely benign’, and ‘benign’ to describe variants identified in Mendelian disorders. Moreover, this recommendation describes a process for classification of variants into these five categories based on criteria using typical types of variant evidence (e.g. population data, computational data, functional data, segregation data, etc.). Because of the increased complexity of analysis and interpretation of clinical genetic testing described in this report, the ACMG strongly recommends that clinical molecular genetic testing should be performed in a CLIA-approved laboratory with results interpreted by a board-certified clinical molecular geneticist or molecular genetic pathologist or equivalent.
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            An integrated map of genetic variation from 1,092 human genomes

            Summary Through characterising the geographic and functional spectrum of human genetic variation, the 1000 Genomes Project aims to build a resource to help understand the genetic contribution to disease. We describe the genomes of 1,092 individuals from 14 populations, constructed using a combination of low-coverage whole-genome and exome sequencing. By developing methodologies to integrate information across multiple algorithms and diverse data sources we provide a validated haplotype map of 38 million SNPs, 1.4 million indels and over 14 thousand larger deletions. We show that individuals from different populations carry different profiles of rare and common variants and that low-frequency variants show substantial geographic differentiation, which is further increased by the action of purifying selection. We show that evolutionary conservation and coding consequence are key determinants of the strength of purifying selection, that rare-variant load varies substantially across biological pathways and that each individual harbours hundreds of rare non-coding variants at conserved sites, such as transcription-factor-motif disrupting changes. This resource, which captures up to 98% of accessible SNPs at a frequency of 1% in populations of medical genetics focus, enables analysis of common and low-frequency variants in individuals from diverse, including admixed, populations.
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              MutationTaster2: mutation prediction for the deep-sequencing age.

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                Author and article information

                Contributors
                ypliu@ibms.pumc.edu.cn
                wangtaopumch@126.com
                Journal
                Mol Genet Genomic Med
                Mol Genet Genomic Med
                10.1002/(ISSN)2324-9269
                MGG3
                Molecular Genetics & Genomic Medicine
                John Wiley and Sons Inc. (Hoboken )
                2324-9269
                20 December 2020
                February 2021
                : 9
                : 2 ( doiID: 10.1002/mgg3.v9.2 )
                : e1580
                Affiliations
                [ 1 ] Department of Dermatology Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College Beijing China
                [ 2 ] Department of Medical Genetics and National Laboratory of Medical Molecular Biology Institute of Basic Medical Sciences Chinese Academy of Medical Sciences and Peking Union Medical College Beijing China
                Author notes
                [*] [* ] Correspondence

                Yaping Liu, Department of Medical Genetics and National Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100005, China.

                Email: ypliu@ 123456ibms.pumc.edu.cn

                Tao Wang, Department of Dermatology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Dongcheng District, Beijing 100730, China.

                Email: wangtaopumch@ 123456126.com

                Author information
                https://orcid.org/0000-0001-6433-9298
                https://orcid.org/0000-0003-0923-800X
                https://orcid.org/0000-0002-9998-2862
                Article
                MGG31580
                10.1002/mgg3.1580
                8077163
                33345454
                02b40953-df2a-4bb5-8c19-80383be97818
                © 2020 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 15 October 2020
                : 21 June 2020
                : 17 November 2020
                Page count
                Figures: 9, Tables: 2, Pages: 0, Words: 13859
                Funding
                Funded by: Beijing Dongcheng District Excellent Talent Support Training project
                Award ID: 2019JGM‐5)
                Funded by: Fundamental Research Funds for the Central Universities
                Award ID: 3332018025
                Funded by: National Key Research and Development Program of China Grant
                Award ID: 2016YFC0901500)
                Funded by: Center for Rare Diseases Research, Chinese Academy of Medical Sciences
                Funded by: National Scientific Data Sharing Platform for Population and Health ‐ Clinical Centre
                Award ID: NCMI‐ABD02‐201709
                Categories
                Original Article
                Original Articles
                Custom metadata
                2.0
                February 2021
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.0.2 mode:remove_FC converted:27.04.2021

                atp2c1 gene,dna sequencing,generalized hailey–hailey disease,splice‐site mutation

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