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      Exploiting genetic diversity from landraces in wheat breeding for adaptation to climate change.

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          Abstract

          Climate change has generated unpredictability in the timing and amount of rain, as well as extreme heat and cold spells that have affected grain yields worldwide and threaten food security. Sources of specific adaptation related to drought and heat, as well as associated breeding of genetic traits, will contribute to maintaining grain yields in dry and warm years. Increased crop photosynthesis and biomass have been achieved particularly through disease resistance and healthy leaves. Similarly, sources of drought and heat adaptation through extended photosynthesis and increased biomass would also greatly benefit crop improvement. Wheat landraces have been cultivated for thousands of years under the most extreme environmental conditions. They have also been cultivated in lower input farming systems for which adaptation traits, particularly those that increase the duration of photosynthesis, have been conserved. Landraces are a valuable source of genetic diversity and specific adaptation to local environmental conditions according to their place of origin. Evidence supports the hypothesis that landraces can provide sources of increased biomass and thousand kernel weight, both important traits for adaptation to tolerate drought and heat. Evaluation of wheat landraces stored in gene banks with highly beneficial untapped diversity and sources of stress adaptation, once characterized, should also be used for wheat improvement. Unified development of databases and promotion of data sharing among physiologists, pathologists, wheat quality scientists, national programmes, and breeders will greatly benefit wheat improvement for adaptation to climate change worldwide.

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          Most cited references52

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          Rare and common variants: twenty arguments.

          Genome-wide association studies have greatly improved our understanding of the genetic basis of disease risk. The fact that they tend not to identify more than a fraction of the specific causal loci has led to divergence of opinion over whether most of the variance is hidden as numerous rare variants of large effect or as common variants of very small effect. Here I review 20 arguments for and against each of these models of the genetic basis of complex traits and conclude that both classes of effect can be readily reconciled.
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            Genome-wide association study for grain yield and related traits in an elite spring wheat population grown in temperate irrigated environments.

            Through genome-wide association study, loci for grain yield and yield components were identified in chromosomes 5A and 6A in spring wheat (Triticum aestivum). Genome-wide association study (GWAS) was conducted for grain yield (YLD) and yield components on a wheat association mapping initiative (WAMI) population of 287 elite, spring wheat lines grown under temperate irrigated high-yield potential condition in Ciudad Obregón, Mexico, during four crop cycles (from 2009-2010 to 2012-2013). The population was genotyped with high-density Illumina iSelect 90K single nucleotide polymorphisms (SNPs) assay. An analysis of traits across subpopulations indicated that lines with 1B/1R translocation had higher YLD, grain weight, and taller plants than lines without the translocation. GWAS using 18,704 SNPs identified 31 loci that explained 5-14 % of the variation in individual traits. We identified SNPs in chromosome 5A and 6A that were significantly associated with yield and yield components. Four loci were detected for YLD in chromosomes 3B, 5A, 5B, and 6A and the locus in 5A explained 5 % of the variation for grain number/m(2). The locus for YLD in chromosome 6A also explained 6 % of the variation in grain weight. Loci significantly associated with maturity were identified in chromosomes 2B, 3B, 4B, 4D, and 6A and for plant height in 1A and 6A. Loci were also detected for canopy temperature at grain filling (2D, 4D, 6A), chlorophyll index at grain filling (3B and 6A), biomass (3D and 6A) and harvest index (1D, 1B, and 3B) that explained 5-10 % variation. These markers will be further validated.
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              Raising yield potential of wheat. III. Optimizing partitioning to grain while maintaining lodging resistance.

              A substantial increase in grain yield potential is required, along with better use of water and fertilizer, to ensure food security and environmental protection in future decades. For improvements in photosynthetic capacity to result in additional wheat yield, extra assimilates must be partitioned to developing spikes and grains and/or potential grain weight increased to accommodate the extra assimilates. At the same time, improvement in dry matter partitioning to spikes should ensure that it does not increase stem or root lodging. It is therefore crucial that improvements in structural and reproductive aspects of growth accompany increases in photosynthesis to enhance the net agronomic benefits of genetic modifications. In this article, six complementary approaches are proposed, namely: (i) optimizing developmental pattern to maximize spike fertility and grain number, (ii) optimizing spike growth to maximize grain number and dry matter harvest index, (iii) improving spike fertility through desensitizing floret abortion to environmental cues, (iv) improving potential grain size and grain filling, and (v) improving lodging resistance. Since many of the traits tackled in these approaches interact strongly, an integrative modelling approach is also proposed, to (vi) identify any trade-offs between key traits, hence to define target ideotypes in quantitative terms. The potential for genetic dissection of key traits via quantitative trait loci analysis is discussed for the efficient deployment of existing variation in breeding programmes. These proposals should maximize returns in food production from investments in increased crop biomass by increasing spike fertility, grain number per unit area and harvest index whilst optimizing the trade-offs with potential grain weight and lodging resistance.
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                Author and article information

                Journal
                J. Exp. Bot.
                Journal of experimental botany
                1460-2431
                0022-0957
                Jun 2015
                : 66
                : 12
                Affiliations
                [1 ] CIMMYT, PO Box 39, Emek, 06511 Ankara, Turkey m.dasilva@cgiar.org.
                [2 ] Department of Agronomy and Horticulture, 362D Plant Science Building, 1875 N. 38th Street, University of Nebraska, Lincoln, NE 68583-0915, USA Crop Science Department, 15 F, Mogamaa El-Abadia, Faculty of Agriculture, Damanhour University, Damanhour 22516, Egypt.
                [3 ] Department of Agronomy and Horticulture, 362D Plant Science Building, 1875 N. 38th Street, University of Nebraska, Lincoln, NE 68583-0915, USA.
                [4 ] CIMMYT, Int. Apdo. Postal 6-641, 06600 Mexico, DF, Mexico.
                [5 ] IRTA, Avda Rovira Roure 191, 25198 Lleida, Spain.
                [6 ] Central Field Crops Research Institute, Şehit Cem Ersever Cad. No: 9-11 Yenimahalle, 06520 Ankara, Turkey.
                [7 ] Gap Uluslararası Tarımsal Araştırma ve Eğitim Merkezi Silvan Yolu Üzeri 9. Km PK.72, 21110 Diyarbakir, Turkey.
                [8 ] Bahri Dagdas Uluslararasi Tarimsal Arastirma Enstitüsü, PK:125, Karatay, 42020 Konya, Turkey.
                [9 ] Kihara Institute for Biological Research, Yokohama City University, Yokohama 244-0813, Japan.
                Article
                erv122
                10.1093/jxb/erv122
                25821073
                253cd2a2-474f-46d8-9377-5c0cb2de0856
                © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.
                History

                Bottleneck,conservation,diversity,drought,durum wheat,heat.
                Bottleneck, conservation, diversity, drought, durum wheat, heat.

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