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      Sycp2 is essential for synaptonemal complex assembly, early meiotic recombination and homologous pairing in zebrafish spermatocytes

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          Abstract

          Meiotic recombination is essential for faithful segregation of homologous chromosomes during gametogenesis. The progression of recombination is associated with dynamic changes in meiotic chromatin structures. However, whether Sycp2, a key structural component of meiotic chromatin, is required for the initiation of meiotic recombination is still unclear in vertebrates. Here, we describe that Sycp2 is required for assembly of the synaptonemal complex and early meiotic events in zebrafish spermatocytes. Our genetic screening by N-ethyl-N-nitrosourea mutagenesis revealed that ietsugu ( its), a mutant zebrafish line with an aberrant splice site in the sycp2 gene, showed a defect during meiotic prophase I. The its mutation appeared to be a hypomorphic mutation compared to sycp2 knockout mutations generated by TALEN mutagenesis. Taking advantage of these sycp2 hypomorphic and knockout mutant lines, we demonstrated that Sycp2 is required for the assembly of the synaptonemal complex that is initiated in the vicinity of telomeres in wild-type zebrafish spermatocytes. Accordingly, homologous pairing, the foci of the meiotic recombinases Dmc1/Rad51 and RPA, and γH2AX signals were largely diminished in sycp2 knockout spermatocytes. Taken together, our data indicate that Sycp2 plays a critical role in not only the assembly of the synaptonemal complex, but also early meiotic recombination and homologous pairing, in vertebrates.

          Author summary

          Meiosis is an essential type of cell division whose purpose is to produce gametes, such as eggs and sperm, for sexually reproducing eukaryotes. Most cells in the human body are diploid cells containing two homologous copies of each chromosome. Meiosis halves the genetic contents of diploid cells and produces haploid gametes with a single copy of each homologous chromosome pair. The faithful transmission of chromosomes is one of the main tasks in meiosis, since extra or missing chromosomes are common causes of genetic disorders, birth defects and infertility. Prior to proper segregation, homologs must pair up and be physically connected. This is achieved by homologous recombination initiated by programmed DNA double-strand breaks. Since it can be deleterious to cells, this initiation step is highly regulated by factors that are not fully understood. In this study, we found that Sycp2, a structural component of meiotic chromatin in metazoans, is essential for the initiation of homologous recombination, meiotic chromatin organization, and homologous pairing in zebrafish. These findings support recent biochemical studies that Sycp2 and Sycp3 serve as a vertebrate counterpart of S. cerevisiae Red1.

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          Most cited references56

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          Efficient In Vivo Genome Editing Using RNA-Guided Nucleases

          Clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated (Cas) systems have evolved in bacteria and archaea as a defense mechanism to silence foreign nucleic acids of viruses and plasmids. Recent work has shown that bacterial type II CRISPR systems can be adapted to create guide RNAs (gRNAs) capable of directing site-specific DNA cleavage by the Cas9 nuclease in vitro. Here we show that this system can function in vivo to induce targeted genetic modifications in zebrafish embryos with efficiencies comparable to those obtained using ZFNs and TALENs for the same genes. RNA-guided nucleases robustly enabled genome editing at 9 of 11 different sites tested, including two for which TALENs previously failed to induce alterations. These results demonstrate that programmable CRISPR/Cas systems provide a simple, rapid, and highly scalable method for altering genes in vivo, opening the door to using RNA-guided nucleases for genome editing in a wide range of organisms.
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            Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting

            TALENs are important new tools for genome engineering. Fusions of transcription activator-like (TAL) effectors of plant pathogenic Xanthomonas spp. to the FokI nuclease, TALENs bind and cleave DNA in pairs. Binding specificity is determined by customizable arrays of polymorphic amino acid repeats in the TAL effectors. We present a method and reagents for efficiently assembling TALEN constructs with custom repeat arrays. We also describe design guidelines based on naturally occurring TAL effectors and their binding sites. Using software that applies these guidelines, in nine genes from plants, animals and protists, we found candidate cleavage sites on average every 35 bp. Each of 15 sites selected from this set was cleaved in a yeast-based assay with TALEN pairs constructed with our reagents. We used two of the TALEN pairs to mutate HPRT1 in human cells and ADH1 in Arabidopsis thaliana protoplasts. Our reagents include a plasmid construct for making custom TAL effectors and one for TAL effector fusions to additional proteins of interest. Using the former, we constructed de novo a functional analog of AvrHah1 of Xanthomonas gardneri. The complete plasmid set is available through the non-profit repository AddGene and a web-based version of our software is freely accessible online.
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              A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish.

              Piwi proteins specify an animal-specific subclass of the Argonaute family that, in vertebrates, is specifically expressed in germ cells. We demonstrate that zebrafish Piwi (Ziwi) is expressed in both the male and the female gonad and is a component of a germline-specifying structure called nuage. Loss of Ziwi function results in a progressive loss of germ cells due to apoptosis during larval development. In animals that have reduced Ziwi function, germ cells are maintained but display abnormal levels of apoptosis in adults. In mammals, Piwi proteins associate with approximately 29-nucleotide-long, testis-specific RNA molecules called piRNAs. Here we show that zebrafish piRNAs are present in both ovary and testis. Many of these are derived from transposons, implicating a role for piRNAs in the silencing of repetitive elements in vertebrates. Furthermore, we show that piRNAs are Dicer independent and that their 3' end likely carries a 2'O-Methyl modification.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: ValidationRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: SoftwareRole: SupervisionRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: InvestigationRole: MethodologyRole: Validation
                Role: Methodology
                Role: MethodologyRole: ResourcesRole: Supervision
                Role: Funding acquisitionRole: MethodologyRole: ResourcesRole: SupervisionRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Funding acquisitionRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Genet
                PLoS Genet
                plos
                plosgen
                PLoS Genetics
                Public Library of Science (San Francisco, CA USA )
                1553-7390
                1553-7404
                24 February 2020
                February 2020
                : 16
                : 2
                : e1008640
                Affiliations
                [1 ] Department of Genetics, School of Life Science, SOKENDAI (The Graduate University for Advanced Studies), Mishima, Japan
                [2 ] Department of Gene Function and Phenomics, National Institute of Genetics, Mishima, Japan
                [3 ] Radiation Biology Center and Graduate School of Biostudies, Kyoto University, Kyoto, Japan
                [4 ] Department of Chromosome Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan
                Cornell University, UNITED STATES
                Author notes

                The authors have declared that no competing interests exist.

                [¤]

                Current address: Laboratory of Chromosome Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan

                Author information
                http://orcid.org/0000-0002-4716-2563
                http://orcid.org/0000-0002-5320-6024
                http://orcid.org/0000-0002-7515-1511
                http://orcid.org/0000-0001-8403-8281
                Article
                PGENETICS-D-19-00970
                10.1371/journal.pgen.1008640
                7062287
                32092049
                ddf5a8b9-38dd-4cff-9fa7-eb1fcca7c89b
                © 2020 Takemoto et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 15 June 2019
                : 29 January 2020
                Page count
                Figures: 7, Tables: 1, Pages: 29
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100001691, Japan Society for the Promotion of Science;
                Award ID: JPK19K16045, JP18H06057
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001691, Japan Society for the Promotion of Science;
                Award ID: 16H01257
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001691, Japan Society for the Promotion of Science;
                Award ID: 25251034, 25114003
                Award Recipient :
                This work was supported by JSPS KAKENHI (Grant Numbers JP19K16045 and JP18H06057 to YI), and partly supported by JSPS KAKENHI (Grant Number 16H01257 to KI, and 25251034 and 25114003 to NS). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Cell Biology
                Cellular Types
                Animal Cells
                Germ Cells
                Sperm
                Spermatocytes
                Research and Analysis Methods
                Animal Studies
                Experimental Organism Systems
                Model Organisms
                Zebrafish
                Research and Analysis Methods
                Model Organisms
                Zebrafish
                Research and Analysis Methods
                Animal Studies
                Experimental Organism Systems
                Animal Models
                Zebrafish
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Vertebrates
                Fish
                Osteichthyes
                Zebrafish
                Biology and Life Sciences
                Cell Biology
                Chromosome Biology
                Chromosomes
                Chromosome Structure and Function
                Telomeres
                Biology and Life Sciences
                Anatomy
                Reproductive System
                Genital Anatomy
                Testes
                Medicine and Health Sciences
                Anatomy
                Reproductive System
                Genital Anatomy
                Testes
                Research and Analysis Methods
                Specimen Preparation and Treatment
                Staining
                Nuclear Staining
                Research and Analysis Methods
                Specimen Preparation and Treatment
                Staining
                Immunostaining
                Research and Analysis Methods
                Specimen Preparation and Treatment
                Staining
                Chromosome Staining
                Biology and life sciences
                Genetics
                DNA
                DNA recombination
                Homologous Recombination
                Biology and life sciences
                Biochemistry
                Nucleic acids
                DNA
                DNA recombination
                Homologous Recombination
                Custom metadata
                vor-update-to-uncorrected-proof
                2020-03-09
                All relevant data are within the manuscript and its Supporting Information files.

                Genetics
                Genetics

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