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      Extracellular MicroRNAs as Potential Biomarkers for Frail Kidney Phenotype: Progresses and Precautions

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          Abstract

          Frailty describes the cumulative subtle health deficits leading to an increased vulnerability to insults among older individuals or disease-laden ones. The prevalence of frailty increases substantially and relentlessly over declining renal function. Frailty in patients with chronic kidney disease (CKD) carries kidney-specific risk factors, clinical correlates and outcomes associations, hence alternatively termed frail kidney phenotype by researchers. Pathogenetically, miRNAs participate extensively in the development and aggravation of frailty, including the occurrence of frail kidney phenotype in CKD patients. These understandings spark profound interest in discovering biomarkers for identifying this detrimental phenotype, and extracellular miRNAs emerge as potentially useful ones. Pilot studies identify promising miRNA candidates for evaluating intermediates and surrogates of frail kidney phenotype, and more are underway. Several potential miRNA species in biologic fluids, such as circulating miR-29b and miR-223 (as inflammatory markers), exosomal miR-16-5p, miR-17/92 cluster members, and miR-106-5p (for uremic vasculopathy), serum exosomal miR-203a-3p (for uremic sarcopenia) have been examined and can be promising choices. Nonetheless, there remains research gap in affirming the direct connections between specific miRNAs and frail kidney phenotype. This stems partially from multiple limitations less well acknowledged before. From this perspective, we further outline the limitations and precautions prior to validating specific extracellular miRNA(s) for this purpose, from the definition of frailty definition, the functional and tissue specificity of miRNAs, the severity of CKD, and various technical considerations. It is expected that more affirmative studies can be produced for extending the utility of extracellular miRNAs in predicting frail kidney phenotype.

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          Most cited references68

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          Frailty in Older Adults: Evidence for a Phenotype

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            Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.

            Exosomes are vesicles of endocytic origin released by many cells. These vesicles can mediate communication between cells, facilitating processes such as antigen presentation. Here, we show that exosomes from a mouse and a human mast cell line (MC/9 and HMC-1, respectively), as well as primary bone marrow-derived mouse mast cells, contain RNA. Microarray assessments revealed the presence of mRNA from approximately 1300 genes, many of which are not present in the cytoplasm of the donor cell. In vitro translation proved that the exosome mRNAs were functional. Quality control RNA analysis of total RNA derived from exosomes also revealed presence of small RNAs, including microRNAs. The RNA from mast cell exosomes is transferable to other mouse and human mast cells. After transfer of mouse exosomal RNA to human mast cells, new mouse proteins were found in the recipient cells, indicating that transferred exosomal mRNA can be translated after entering another cell. In summary, we show that exosomes contain both mRNA and microRNA, which can be delivered to another cell, and can be functional in this new location. We propose that this RNA is called "exosomal shuttle RNA" (esRNA).
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              miRBase: from microRNA sequences to function

              Abstract miRBase catalogs, names and distributes microRNA gene sequences. The latest release of miRBase (v22) contains microRNA sequences from 271 organisms: 38 589 hairpin precursors and 48 860 mature microRNAs. We describe improvements to the database and website to provide more information about the quality of microRNA gene annotations, and the cellular functions of their products. We have collected 1493 small RNA deep sequencing datasets and mapped a total of 5.5 billion reads to microRNA sequences. The read mapping patterns provide strong support for the validity of between 20% and 65% of microRNA annotations in different well-studied animal genomes, and evidence for the removal of >200 sequences from the database. To improve the availability of microRNA functional information, we are disseminating Gene Ontology terms annotated against miRBase sequences. We have also used a text-mining approach to search for microRNA gene names in the full-text of open access articles. Over 500 000 sentences from 18 542 papers contain microRNA names. We score these sentences for functional information and link them with 12 519 microRNA entries. The sentences themselves, and word clouds built from them, provide effective summaries of the functional information about specific microRNAs. miRBase is publicly and freely available at http://mirbase.org/.
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                Author and article information

                Journal
                Aging Dis
                Aging Dis
                Aging and Disease
                JKL International LLC
                2152-5250
                1 August 2024
                1 August 2024
                : 15
                : 4
                : 1474-1481
                Affiliations
                [1-ad-15-4-1474] 1Nephrology division, Department of Internal Medicine, National Taiwan University Hospital, Taipei, Taiwan.
                [2-ad-15-4-1474] 2Nephrology division, Department of Internal Medicine, National Taiwan University College of Medicine, Taipei, Taiwan.
                [3-ad-15-4-1474] 3Graduate Institute of Toxicology, National Taiwan University College of Medicine, Taipei, Taiwan.
                [4-ad-15-4-1474] 4Nephrology division, Department of Internal Medicine, National Taiwan University Hospital BeiHu branch, Taipei, Taiwan.
                [5-ad-15-4-1474] 5Center of Faculty Development, National Taiwan University College of Medicine, Taipei, Taiwan.
                [6-ad-15-4-1474] 6Blood purification division, Department of Integrative Diagnostics and Therapeutics, National Taiwan University Hospital, Taipei, Taiwan.
                [7-ad-15-4-1474] 7Nephrology division, Department of Internal Medicine, Shuang Ho Hospital, Taipei Medical University, Taipei, Taiwan.
                [8-ad-15-4-1474] 8Department of Internal Medicine, School of Medicine, Taipei Medical University, Taipei, Taiwan.
                Author notes
                [* ] Correspondence should be addressed to: Dr. Chia-Ter Chao, National Taiwan University Hospital, Taipei, Taiwan. Email: b88401084@ 123456gmail.com .
                Article
                ad-15-4-1474
                10.14336/AD.2023.0818
                11272190
                37611904
                07d62805-67b1-4b13-94d1-795877fe514e
                Copyright: © 2024 Chao et al.

                this is an open access article distributed under the terms of the creative commons attribution license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

                History
                : 30 July 2023
                : 15 August 2023
                : 18 August 2023
                Funding
                Funded by: National Taiwan University Hospital
                Award ID: 112-N0031
                Award ID: 112-UN0060
                Funded by: National Science Council, Taiwan
                Award ID: 112-2314-B-002-232-MY3
                The study is financially sponsored by National Taiwan University Hospital (112-N0031 and 112-UN0060) and National Science Council, Taiwan (112-2314-B-002-232-MY3).
                Categories
                Perspectives

                biomarker,chronic kidney disease,end-stage kidney disease,frailty,geriatrics,mirnas

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