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      Recent advances in lignin valorization with bacterial cultures: microorganisms, metabolic pathways, and bio-products

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          Abstract

          Lignin is the most abundant aromatic substrate on Earth and its valorization technologies are still under developed. Depolymerization and fragmentation are the predominant preparatory strategies for valorization of lignin to chemicals and fuels. However, due to the structural heterogeneity of lignin, depolymerization and fragmentation typically result in diverse product species, which require extensive separation and purification procedures to obtain target products. For lignin valorization, bacterial-based systems have attracted increasing attention because of their diverse metabolisms, which can be used to funnel multiple lignin-based compounds into specific target products. Here, recent advances in lignin valorization using bacteria are critically reviewed, including lignin-degrading bacteria that are able to degrade lignin and use lignin-associated aromatics, various associated metabolic pathways, and application of bacterial cultures for lignin valorization. This review will provide insight into the recent breakthroughs and future trends of lignin valorization based on bacterial systems.

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          Most cited references140

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          Catalytic Transformation of Lignin for the Production of Chemicals and Fuels.

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            Pathways for degradation of lignin in bacteria and fungi.

            Lignin is a heterogeneous aromatic polymer found as 10-35% of lignocellulose, found in plant cell walls. The bio-conversion of plant lignocellulose to glucose is an important part of second generation biofuel production, but the resistance of lignin to breakdown is a major obstacle in this process, hence there is considerable interest in the microbial breakdown of lignin. White-rot fungi are known to break down lignin with the aid of extracellular peroxidase and laccase enzymes. There are also reports of bacteria that can degrade lignin, and recent work indicates that bacterial lignin breakdown may be more significant than previously thought. The review will discuss the enzymes for lignin breakdown in fungi and bacteria, and the catabolic pathways for breakdown of the β-aryl ether, biphenyl and other components of lignin in bacteria and fungi. The review will also discuss small molecule phenolic breakdown products from lignin that have been identified from lignin-degrading microbes, and includes a bioinformatic analysis of the occurrence of known lignin-degradation pathways in Gram-positive and Gram-negative bacteria.
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              Lignin valorization through integrated biological funneling and chemical catalysis.

              Lignin is an energy-dense, heterogeneous polymer comprised of phenylpropanoid monomers used by plants for structure, water transport, and defense, and it is the second most abundant biopolymer on Earth after cellulose. In production of fuels and chemicals from biomass, lignin is typically underused as a feedstock and burned for process heat because its inherent heterogeneity and recalcitrance make it difficult to selectively valorize. In nature, however, some organisms have evolved metabolic pathways that enable the utilization of lignin-derived aromatic molecules as carbon sources. Aromatic catabolism typically occurs via upper pathways that act as a "biological funnel" to convert heterogeneous substrates to central intermediates, such as protocatechuate or catechol. These intermediates undergo ring cleavage and are further converted via the β-ketoadipate pathway to central carbon metabolism. Here, we use a natural aromatic-catabolizing organism, Pseudomonas putida KT2440, to demonstrate that these aromatic metabolic pathways can be used to convert both aromatic model compounds and heterogeneous, lignin-enriched streams derived from pilot-scale biomass pretreatment into medium chain-length polyhydroxyalkanoates (mcl-PHAs). mcl-PHAs were then isolated from the cells and demonstrated to be similar in physicochemical properties to conventional carbohydrate-derived mcl-PHAs, which have applications as bioplastics. In a further demonstration of their utility, mcl-PHAs were catalytically converted to both chemical precursors and fuel-range hydrocarbons. Overall, this work demonstrates that the use of aromatic catabolic pathways enables an approach to valorize lignin by overcoming its inherent heterogeneity to produce fuels, chemicals, and materials.
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                Author and article information

                Contributors
                xzx018@njust.edu.cn
                zhlei_121@163.com
                ruizhai@njust.edu.cn
                zqwen@njust.edu.cn
                +86-25-84315173 , jinmingjie@njust.edu.cn
                Journal
                Biotechnol Biofuels
                Biotechnol Biofuels
                Biotechnology for Biofuels
                BioMed Central (London )
                1754-6834
                15 February 2019
                15 February 2019
                2019
                : 12
                : 32
                Affiliations
                [1 ]ISNI 0000 0000 9116 9901, GRID grid.410579.e, School of Environmental and Biological Engineering, , Nanjing University of Science and Technology, ; Nanjing, 210094 China
                [2 ]Nanjing Institute for Comprehensive Utilization of Wild Plants, Nanjing, 211111 China
                Article
                1376
                10.1186/s13068-019-1376-0
                6376720
                379e37be-b236-4eb2-9c49-bd53397b009b
                © The Author(s) 2019

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 8 November 2018
                : 8 February 2019
                Funding
                Funded by: National Key R&D Program of China
                Award ID: 2016YFE0105400
                Award Recipient :
                Funded by: National Natural Science Foundation of China
                Award ID: 21808111
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100001809, National Natural Science Foundation of China;
                Award ID: 21606132
                Award Recipient :
                Funded by: Natural Science Foundation of Jiangsu Province (CN)
                Award ID: BK20160823
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100004608, Natural Science Foundation of Jiangsu Province;
                Award ID: BK20170829
                Award Recipient :
                Funded by: the Fundamental Research Funds for the Central Universities
                Award ID: 30916011202
                Award ID: 30917011307
                Award Recipient :
                Categories
                Review
                Custom metadata
                © The Author(s) 2019

                Biotechnology
                biorefinery,lignin valorization,aromatic compounds,metabolism of lignin-based aromatics,biodegradation,lignin-degrading bacteria,lipid production,pha production,cis, cis-muconic acid production

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