Disease-induced changes in plant microbiome assembly and functional adaptation.

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Abstract

The plant microbiome is an integral part of the host and increasingly recognized as playing fundamental roles in plant growth and health. Increasing evidence indicates that plant rhizosphere recruits beneficial microbes to the plant to suppress soil-borne pathogens. However, the ecological processes that govern plant microbiome assembly and functions in the below- and aboveground compartments under pathogen invasion are not fully understood. Here, we studied the bacterial and fungal communities associated with 12 compartments (e.g., soils, roots, stems, and fruits) of chili pepper (Capsicum annuum L.) using amplicons (16S and ITS) and metagenomics approaches at the main pepper production sites in China and investigated how Fusarium wilt disease (FWD) affects the assembly, co-occurrence patterns, and ecological functions of plant-associated microbiomes.

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Author and article information

Journal

Journal ID (iso-abbrev): Microbiome

Title: Microbiome

Publisher: Springer Science and Business Media LLC

ISSN (Electronic): 2049-2618

ISSN (Print): 2049-2618

Publication date (Electronic): September 15 2021

Volume: 9

Issue: 1

Affiliations

[1 ] State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

[2 ] College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.

[3 ] State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085, Beijing, China.

[4 ] Department of Pathology, Sidra Medicine, Doha, Qatar.

[5 ] Department of Pathology and Laboratory Medicine, Weill Cornell Medicine-Qatar, Doha, Qatar.

[6 ] Division of Infectious Diseases, Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada.

[7 ] Pepper Research Institute, Guizhou Provincial Academy of Agricultural Sciences, 550009, Guiyang, China.

[8 ] State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China. cail@im.ac.cn.

[9 ] College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China. cail@im.ac.cn.

Article

Publisher Item ID: 10.1186/s40168-021-01138-2

DOI: 10.1186/s40168-021-01138-2

PMC ID: 8444440

PubMed ID: 34526096

SO-VID: 7e700c0a-2982-43fe-8a5d-31dc15040995

History

Keywords: Beneficial microbe,Chili pepper,Compartment,Fusarium wilt disease,Metagenomics,Microbial network,Microbiome assembly

Data availability:

Keywords: Beneficial microbe, Chili pepper, Compartment, Fusarium wilt disease, Metagenomics, Microbial network, Microbiome assembly

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