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      Picoeukaryotes of the Micromonas genus: sentinels of a warming ocean

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          Abstract

          Photosynthetic picoeukaryotesx in the genus Micromonas show among the widest latitudinal distributions on Earth, experiencing large thermal gradients from poles to tropics. Micromonas comprises at least four different species often found in sympatry. While such ubiquity might suggest a wide thermal niche, the temperature response of the different strains is still unexplored, leaving many questions as for their ecological success over such diverse ecosystems. Using combined experiments and theory, we characterize the thermal response of eleven Micromonas strains belonging to four species. We demonstrate that the variety of specific responses to temperature in the Micromonas genus makes this environmental factor an ideal marker to describe its global distribution and diversity. We then propose a diversity model for the genus Micromonas, which proves to be representative of the whole phytoplankton diversity. This prominent primary producer is therefore a sentinel organism of phytoplankton diversity at the global scale. We use the diversity within Micromonas to anticipate the potential impact of global warming on oceanic phytoplankton. We develop a dynamic, adaptive model and run forecast simulations, exploring a range of adaptation time scales, to probe the likely responses to climate change. Results stress how biodiversity erosion depends on the ability of organisms to adapt rapidly to temperature increase.

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          Swarm: robust and fast clustering method for amplicon-based studies

          Popular de novo amplicon clustering methods suffer from two fundamental flaws: arbitrary global clustering thresholds, and input-order dependency induced by centroid selection. Swarm was developed to address these issues by first clustering nearly identical amplicons iteratively using a local threshold, and then by using clusters’ internal structure and amplicon abundances to refine its results. This fast, scalable, and input-order independent approach reduces the influence of clustering parameters and produces robust operational taxonomic units.
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            Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients.

            Prochlorococcus is the numerically dominant phytoplankter in the oligotrophic oceans, accounting for up to half of the photosynthetic biomass and production in some regions. Here, we describe how the abundance of six known ecotypes, which have small subunit ribosomal RNA sequences that differ by less than 3%, changed along local and basin-wide environmental gradients in the Atlantic Ocean. Temperature was significantly correlated with shifts in ecotype abundance, and laboratory experiments confirmed different temperature optima and tolerance ranges for cultured strains. Light, nutrients, and competitor abundances also appeared to play a role in shaping different distributions.
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              A global pattern of thermal adaptation in marine phytoplankton.

              Rising ocean temperatures will alter the productivity and composition of marine phytoplankton communities, thereby affecting global biogeochemical cycles. Predicting the effects of future ocean warming on biogeochemical cycles depends critically on understanding how existing global temperature variation affects phytoplankton. Here we show that variation in phytoplankton temperature optima over 150 degrees of latitude is well explained by a gradient in mean ocean temperature. An eco-evolutionary model predicts a similar relationship, suggesting that this pattern is the result of evolutionary adaptation. Using mechanistic species distribution models, we find that rising temperatures this century will cause poleward shifts in species' thermal niches and a sharp decline in tropical phytoplankton diversity in the absence of an evolutionary response.
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                Author and article information

                Contributors
                david.demory@biosci.gatech.edu
                olivier.bernard@inria.fr
                srabouille@obs-vlfr.fr
                Journal
                ISME J
                ISME J
                The ISME Journal
                Nature Publishing Group UK (London )
                1751-7362
                1751-7370
                16 August 2018
                January 2019
                : 13
                : 1
                : 132-146
                Affiliations
                [1 ] ISNI 0000 0001 2097 4943, GRID grid.213917.f, School of Biology, , Georgia Institute of Technology, ; Atlanta, GA USA
                [2 ] ISNI 0000 0001 2308 1657, GRID grid.462844.8, Sorbonne University, UPMC Univ Paris 06, INSU-CNRS, UMR 7093, Laboratoire Océanographique de Villefranche, ; 181 Chemin du Lazaret, 06230 Villefranche-sur-mer, France
                [3 ] ISNI 0000 0001 2186 3954, GRID grid.5328.c, University of Côte d’Azur, INRIA, BIOCORE team, ; BP93, 06902 Sophia-Antipolis Cedex, France
                [4 ] ISNI 0000 0001 2203 0006, GRID grid.464101.6, Sorbonne University, UPMC Univ Paris 06, CNRS, UMR 7144, Station Biologique de Roscoff, ; 29680 Roscoff, France
                [5 ] ISNI 0000 0004 1936 8024, GRID grid.8391.3, Biosciences, , University of Exeter, ; Exeter, UK
                [6 ] ISNI 0000 0001 2203 0006, GRID grid.464101.6, Sorbonne University, UPMC Univ Paris 06, CNRS, Fédération de Recherche FR2424, Station Biologique de Roscoff, ; 29680 Roscoff, France
                Author information
                http://orcid.org/0000-0002-6018-5153
                Article
                PMC6299001 PMC6299001 6299001 248
                10.1038/s41396-018-0248-0
                6299001
                30116039
                b279bb39-dc2e-4ce7-8ae5-eabcfd95e5cd
                © International Society for Microbial Ecology 2018
                History
                : 28 August 2017
                : 15 May 2018
                : 11 June 2018
                Categories
                Article
                Custom metadata
                © International Society for Microbial Ecology 2019

                Microbial ecology,Biogeography,Climate-change ecology

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