Contributors
Guillaume Marçais:
ORCID: http://orcid.org/0000-0002-5083-5925
Role: ConceptualizationRole: Data curationRole: InvestigationRole: MethodologyRole:
SoftwareRole: ValidationRole: Writing – original draftRole: Writing – review & editing
Arthur L. Delcher: Role: Data curationRole: SoftwareRole: ValidationRole: Writing – review & editing
Adam M. Phillippy: Role: Data curationRole: SoftwareRole: ValidationRole: Writing – review & editing
Rachel Coston: Role: Formal analysisRole: Validation
Steven L. Salzberg: Role: Funding acquisitionRole: MethodologyRole: ValidationRole: Writing – review &
editing
Aleksey Zimin:
ORCID: http://orcid.org/0000-0001-5091-3092
Role: ConceptualizationRole: Data curationRole: Funding acquisitionRole: InvestigationRole:
MethodologyRole: Project administrationRole: SoftwareRole: SupervisionRole: ValidationRole:
VisualizationRole: Writing – original draftRole: Writing – review & editing
Aaron E. Darling: Role: Editor
Journal
Journal ID (nlm-ta): PLoS Comput Biol
Journal ID (iso-abbrev): PLoS Comput. Biol
Journal ID (publisher-id): plos
Journal ID (pmc): ploscomp
Title:
PLoS Computational Biology
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1553-734X
ISSN
(Electronic):
1553-7358
Publication date Collection:
January
2018
Publication date
(Electronic):
26
January
2018
Volume: 14
Issue: 1
Electronic Location Identifier: e1005944
Affiliations
[1
]
Institute for Physical Science and Technology, University of Maryland, College Park,
Maryland, United States of America
[2
]
Computational Biology Department, Carnegie Mellon University, Pittsburgh, Pennsylvania,
United States of America
[3
]
Center for Computational Biology, Johns Hopkins School of Medicine, Baltimore, Maryland,
United States of America
[4
]
National Human Genome Research Institute, Bethesda, Maryland, United States of America
[5
]
Departments of Biomedical Engineering, Computer Science, and Biostatistics, Johns
Hopkins University, Baltimore, Maryland, United States of America
University of Technology Sydney, AUSTRALIA
Author notes
The authors have declared that no competing interests exist.
Author information
Article
Publisher ID:
PCOMPBIOL-D-17-01370
DOI: 10.1371/journal.pcbi.1005944
PMC ID: 5802927
PubMed ID: 29373581
SO-VID: 67111f40-5140-451f-9df5-c2044304866a
License:
This is an open access article, free of all copyright, and may be freely reproduced,
distributed, transmitted, modified, built upon, or otherwise used by anyone for any
lawful purpose. The work is made available under the
Creative Commons CC0 public domain dedication.
History
Date
received
: 15
August
2017
Date
accepted
: 1
January
2018
Page count
Figures: 1,
Tables: 6,
Pages: 14
Funding
Funded by: funder-id http://dx.doi.org/10.13039/100000002, National Institutes of Health;
Award ID: R01 GM083873
Award Recipient
:
Steven L Salzberg
Funded by: funder-id http://dx.doi.org/10.13039/100000936, Gordon and Betty Moore Foundation;
Award ID: GBMF4554
Award Recipient
:
ORCID: http://orcid.org/0000-0002-5083-5925
Guillaume Marçais
Funded by: funder-id http://dx.doi.org/10.13039/100000001, National Science Foundation;
Award ID: IOS-1238231
Award Recipient
:
ORCID: http://orcid.org/0000-0001-5091-3092
Aleksey V Zimin
Funded by: funder-id http://dx.doi.org/10.13039/100000001, National Science Foundation;
Award ID: ABR-PG-144893
Award Recipient
:
ORCID: http://orcid.org/0000-0001-5091-3092
Aleksey V Zimin
This research was supported in part by the U.S. National Institutes of Health under
grant R01 GM083873 to Steven Salzberg, in part by the Gordon and Betty Moore Foundation’s
Data-Driven Discovery Initiative through Grant GBMF4554 to Carl Kingsford, and in
part by National Science Foundation Grants IOS-1238231 to Jan Dvorak, IOS-144893 to
Herbert Aldwinckle, Keithanne Mockaitis, Aleksey Zimin, James Yorke and Marcela Yepes.
The funders had no role in study design, data collection and analysis, decision to
publish, or preparation of the manuscript.
Categories
Subject:
Research Article
Subject:
Research and Analysis Methods
Subject:
Database and Informatics Methods
Subject:
Bioinformatics
Subject:
Sequence Analysis
Subject:
Sequence Alignment
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Plant Genomics
Subject:
Biology and Life Sciences
Subject:
Biotechnology
Subject:
Plant Biotechnology
Subject:
Plant Genomics
Subject:
Biology and Life Sciences
Subject:
Plant Science
Subject:
Plant Biotechnology
Subject:
Plant Genomics
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Plant Genetics
Subject:
Plant Genomics
Subject:
Biology and Life Sciences
Subject:
Plant Science
Subject:
Plant Genetics
Subject:
Plant Genomics
Subject:
Research and Analysis Methods
Subject:
Computational Techniques
Subject:
Split-Decomposition Method
Subject:
Multiple Alignment Calculation
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Human Genomics
Subject:
Research and Analysis Methods
Subject:
Experimental Organism Systems
Subject:
Model Organisms
Subject:
Arabidopsis Thaliana
Subject:
Research and Analysis Methods
Subject:
Model Organisms
Subject:
Arabidopsis Thaliana
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Eukaryota
Subject:
Plants
Subject:
Brassica
Subject:
Arabidopsis Thaliana
Subject:
Research and Analysis Methods
Subject:
Experimental Organism Systems
Subject:
Plant and Algal Models
Subject:
Arabidopsis Thaliana
Subject:
Computer and Information Sciences
Subject:
Computer Software
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Animal Genomics
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Eukaryota
Subject:
Animals
Subject:
Vertebrates
Subject:
Amniotes
Subject:
Mammals
Subject:
Primates
Subject:
Apes
Subject:
Chimpanzees
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