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      Nuclear interacting SET domain protein 1 inactivation impairs GATA1-regulated erythroid differentiation and causes erythroleukemia

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          Abstract

          The nuclear receptor binding SET domain protein 1 (NSD1) is recurrently mutated in human cancers including acute leukemia. We show that NSD1 knockdown alters erythroid clonogenic growth of human CD34 + hematopoietic cells. Ablation of Nsd1 in the hematopoietic system of mice induces a transplantable erythroleukemia. In vitro differentiation of Nsd1 −/− erythroblasts is majorly impaired despite abundant expression of GATA1, the transcriptional master regulator of erythropoiesis, and associated with an impaired activation of GATA1-induced targets. Retroviral expression of wildtype NSD1, but not a catalytically-inactive NSD1 N1918Q SET-domain mutant induces terminal maturation of Nsd1 −/− erythroblasts. Despite similar GATA1 protein levels, exogenous NSD1 but not NSD N1918Q significantly increases the occupancy of GATA1 at target genes and their expression. Notably, exogenous NSD1 reduces the association of GATA1 with the co-repressor SKI, and knockdown of SKI induces differentiation of Nsd1 −/− erythroblasts. Collectively, we identify the NSD1 methyltransferase as a regulator of GATA1-controlled erythroid differentiation and leukemogenesis.

          Abstract

          Loss of function mutations of NSD1 occur in blood cancers. Here, the authors report that NSD1 loss blocks erythroid differentiation which leads to an erythroleukemia-like disease in mice by impairing GATA1-induced target gene activation.

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          Understanding the language of Lys36 methylation at histone H3.

          Histone side chains are post-translationally modified at multiple sites, including at Lys36 on histone H3 (H3K36). Several enzymes from yeast and humans, including the methyltransferases SET domain-containing 2 (Set2) and nuclear receptor SET domain-containing 1 (NSD1), respectively, alter the methylation status of H3K36, and significant progress has been made in understanding how they affect chromatin structure and function. Although H3K36 methylation is most commonly associated with the transcription of active euchromatin, it has also been implicated in diverse processes, including alternative splicing, dosage compensation and transcriptional repression, as well as DNA repair and recombination. Disrupted placement of methylated H3K36 within the chromatin landscape can lead to a range of human diseases, underscoring the importance of this modification.
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            H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape

            Enzymes catalyzing CpG methylation in DNA, including DNMT1 and DNMT3A/B, are indispensable for mammalian tissue development and homeostasis 1–4 . They are also implicated in human developmental disorders and cancers 5–8 , supporting a critical role of DNA methylation during cell fate specification and maintenance. Recent studies suggest that histone post-translational modifications (PTMs) are involved in specifying patterns of DNMT localization and DNA methylation at promoters and actively transcribed gene bodies 9–11 . However, mechanisms governing the establishment and maintenance of intergenic DNA methylation remain poorly understood. Germline mutations in DNMT3A define Tatton-Brown-Rahman syndrome (TBRS), a childhood overgrowth disorder that shares clinical features with Sotos syndrome caused by haploinsufficiency of NSD1, a histone methyltransferase catalyzing di-methylation on H3K36 (H3K36me2) 8,12,13 , pointing to a potential mechanistic link between the two diseases. Here we report that NSD1-mediated H3K36me2 is required for recruitment of DNMT3A and maintenance of DNA methylation at intergenic regions. Genome-wide analysis shows that binding and activity of DNMT3A co-localize with H3K36me2 at non-coding regions of euchromatin. Genetic ablation of NSD1 and its paralogue NSD2 in cells redistributes DNMT3A to H3K36me3-marked gene bodies and reduces intergenic DNA methylation. NSD1 mutant tumors and Sotos patient samples are also associated with intergenic DNA hypomethylation. Accordingly, the PWWP-domain of DNMT3A shows dual recognition of H3K36me2/3 in vitro with a higher binding affinity towards H3K36me2, which is abrogated by TBRS-derived missense mutations. Taken together, our study uncovers a trans-chromatin regulatory pathway that connects aberrant intergenic CpG methylation to human neoplastic and developmental overgrowth.
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              From stem cell to red cell: regulation of erythropoiesis at multiple levels by multiple proteins, RNAs, and chromatin modifications.

              This article reviews the regulation of production of RBCs at several levels. We focus on the regulated expansion of burst-forming unit-erythroid erythroid progenitors by glucocorticoids and other factors that occur during chronic anemia, inflammation, and other conditions of stress. We also highlight the rapid production of RBCs by the coordinated regulation of terminal proliferation and differentiation of committed erythroid colony-forming unit-erythroid progenitors by external signals, such as erythropoietin and adhesion to a fibronectin matrix. We discuss the complex intracellular networks of coordinated gene regulation by transcription factors, chromatin modifiers, and miRNAs that regulate the different stages of erythropoiesis.
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                Author and article information

                Contributors
                J.Schwaller@unibas.ch
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                12 June 2020
                12 June 2020
                2020
                : 11
                : 2807
                Affiliations
                [1 ]ISNI 0000 0004 0509 0981, GRID grid.412347.7, University Children’s Hospital Basel, ; Basel, Switzerland
                [2 ]ISNI 0000 0004 1937 0642, GRID grid.6612.3, Department of Biomedicine, , University of Basel, ; 4031 Basel, Switzerland
                [3 ]Swiss Institute of Bioinfomatics, 4031 Basel, Switzerland
                [4 ]ISNI 0000 0001 0674 042X, GRID grid.5254.6, Genomic Medicine, Righospitalet, , University of Copenhagen, ; 2100 Copenhagen, Denmark
                [5 ]ISNI 0000 0001 2171 2558, GRID grid.5842.b, INSERM U1170, Equipe Labellisée Ligue Contre le Cancer, Gustave Roussy Institute, Université Paris Diderot, , Université Paris-Sud, ; Villejuif, 94800 France
                [6 ]ISNI 0000 0004 1937 0642, GRID grid.6612.3, Proteomics Core Facility, , Biozentrum University of Basel, ; Basel, Switzerland
                [7 ]ISNI 0000 0001 0723 0931, GRID grid.418068.3, Aggeu Magalhães Institute, , Oswaldo Cruz Foundation, ; Recife, Brazil
                [8 ]GRID grid.410567.1, Institute for Pathology, , University Hospital Basel, ; 4031 Basel, Switzerland
                [9 ]ISNI 0000 0001 2157 9291, GRID grid.11843.3f, Institute de Génétique et de Biologie Moléculaire et Cellulaire (I.G.B.M.C.), , CNRS/INSERM Université de Strasbourg, ; BP10142, 67404 Illkirch Cedex, France
                [10 ]ISNI 0000 0001 2110 3787, GRID grid.482245.d, Friedrich Miescher Institute for Biomedical Research, ; 4058 Basel, Switzerland
                [11 ]ISNI 0000 0004 1937 0642, GRID grid.6612.3, Faculty of Sciences, , University of Basel, ; 4056 Basel, Switzerland
                Author information
                http://orcid.org/0000-0002-4004-3473
                http://orcid.org/0000-0002-6898-1365
                http://orcid.org/0000-0003-3873-5240
                http://orcid.org/0000-0002-9314-5318
                http://orcid.org/0000-0001-7102-6804
                http://orcid.org/0000-0002-1100-3819
                http://orcid.org/0000-0002-8403-056X
                http://orcid.org/0000-0001-8616-0096
                Article
                16179
                10.1038/s41467-020-16179-8
                7293310
                32533074
                fe49c045-4afc-4cdc-b11b-03a4c5f8e2fe
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 8 August 2019
                : 17 April 2020
                Funding
                Funded by: FundRef https://doi.org/10.13039/100008672, Wilhelm Sander-Stiftung (Wilhelm Sander Foundation);
                Award ID: 2017-035.1
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100001711, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation);
                Award ID: 31003_A_173224/1
                Award Recipient :
                Funded by: Gertrude von Meissner-Stiftung (Gertrude von Meissner Foundation) Novartis Stiftung für Medizinisch-Biologische Forschung (Novartis Foundation for Medical-Biological Research)
                Categories
                Article
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                © The Author(s) 2020

                Uncategorized
                acute myeloid leukaemia,molecular medicine
                Uncategorized
                acute myeloid leukaemia, molecular medicine

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