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      MRI-based clinical-radiomics model predicts tumor response before treatment in locally advanced rectal cancer

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          Abstract

          Neoadjuvant chemo-radiotherapy (CRT) followed by total mesorectal excision (TME) represents the standard treatment for patients with locally advanced (≥ T3 or N+) rectal cancer (LARC). Approximately 15% of patients with LARC shows a complete response after CRT. The use of pre-treatment MRI as predictive biomarker could help to increase the chance of organ preservation by tailoring the neoadjuvant treatment. We present a novel machine learning model combining pre-treatment MRI-based clinical and radiomic features for the early prediction of treatment response in LARC patients. MRI scans (3.0 T, T2-weighted) of 72 patients with LARC were included. Two readers independently segmented each tumor. Radiomic features were extracted from both the “tumor core” (TC) and the “tumor border” (TB). Partial least square (PLS) regression was used as the multivariate, machine learning, algorithm of choice and leave-one-out nested cross-validation was used to optimize hyperparameters of the PLS. The MRI-Based “clinical-radiomic” machine learning model properly predicted the treatment response (AUC = 0.793, p = 5.6 × 10 –5). Importantly, the prediction improved when combining MRI-based clinical features and radiomic features, the latter extracted from both TC and TB. Prospective validation studies in randomized clinical trials are warranted to better define the role of radiomics in the development of rectal cancer precision medicine.

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          Computational Radiomics System to Decode the Radiographic Phenotype

          Radiomics aims to quantify phenotypic characteristics on medical imaging through the use of automated algorithms. Radiomic artificial intelligence (AI) technology, either based on engineered hard-coded algorithms or deep learning methods, can be used to develop non-invasive imaging-based biomarkers. However, lack of standardized algorithm definitions and image processing severely hampers reproducibility and comparability of results. To address this issue, we developed PyRadiomics , a flexible open-source platform capable of extracting a large panel of engineered features from medical images. PyRadiomics is implemented in Python and can be used standalone or using 3D-Slicer. Here, we discuss the workflow and architecture of PyRadiomics and demonstrate its application in characterizing lung-lesions. Source code, documentation, and examples are publicly available at www.radiomics.io . With this platform, we aim to establish a reference standard for radiomic analyses, provide a tested and maintained resource, and to grow the community of radiomic developers addressing critical needs in cancer research.
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            Large datasets are increasingly common and are often difficult to interpret. Principal component analysis (PCA) is a technique for reducing the dimensionality of such datasets, increasing interpretability but at the same time minimizing information loss. It does so by creating new uncorrelated variables that successively maximize variance. Finding such new variables, the principal components, reduces to solving an eigenvalue/eigenvector problem, and the new variables are defined by the dataset at hand, not a priori, hence making PCA an adaptive data analysis technique. It is adaptive in another sense too, since variants of the technique have been developed that are tailored to various different data types and structures. This article will begin by introducing the basic ideas of PCA, discussing what it can and cannot do. It will then describe some variants of PCA and their application.
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                Author and article information

                Contributors
                p.chiacchiaretta@unich.it
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                8 March 2021
                8 March 2021
                2021
                : 11
                : 5379
                Affiliations
                [1 ]GRID grid.412451.7, ISNI 0000 0001 2181 4941, Department of Neuroscience, Imaging and Clinical Sciences, , “G. D’Annunzio” University, ; Via dei Vestini, 66100 Chieti, Italy
                [2 ]GRID grid.412451.7, ISNI 0000 0001 2181 4941, Department of Radiation Oncology, , SS. Annunziata Hospital, “G. D’Annunzio” University of Chieti, ; Via Dei Vestini, 66100 Chieti, Italy
                [3 ]GRID grid.168010.e, ISNI 0000000419368956, Department of Radiology, , Stanford University School of Medicine, ; Stanford, CA USA
                [4 ]GRID grid.430814.a, Department of Radiology, , Netherlands Cancer Institute, ; Amsterdam, The Netherlands
                [5 ]Unit of Radiology, “San Pio da Pietralcina” Hospital, Vasto, Italy
                [6 ]GRID grid.412451.7, ISNI 0000 0001 2181 4941, Unit of Ultrasound in Internal Medicine, Department of Medicine and Science of Aging, , “G. D’Annunzio” University, ; Chieti, Italy
                [7 ]GRID grid.412451.7, ISNI 0000 0001 2181 4941, Department of Innovative Technologies in Medicine and Odontoiatry, , “G. D’Annunzio” University, ; Chieti, Italy
                [8 ]Division of Pathology, ASST of Valtellina and Alto Lario, Sondrio, Italy
                [9 ]GRID grid.5012.6, ISNI 0000 0001 0481 6099, GROW School for Oncology and Developmental Biology, , Maastricht University, ; Maastricht, The Netherlands
                [10 ]GRID grid.10825.3e, ISNI 0000 0001 0728 0170, Department of Radiology, , University of Southern Denmark, ; Odense, Denmark
                Author information
                http://orcid.org/0000-0003-1089-9809
                Article
                84816
                10.1038/s41598-021-84816-3
                7940398
                33686147
                d407b10c-d186-427a-bdf4-1b3da8f2ebeb
                © The Author(s) 2021

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 13 November 2020
                : 22 February 2021
                Categories
                Article
                Custom metadata
                © The Author(s) 2021

                Uncategorized
                cancer imaging,cancer therapy,tumour biomarkers
                Uncategorized
                cancer imaging, cancer therapy, tumour biomarkers

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