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      Laboratory Activity to Effectively Teach Introductory Geomicrobiology Concepts to Non-Geology Majors

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          Abstract

          We have designed a three-week experiment that can complement any microbiology course, to teach main geomicrobiology concepts for non-geology majors. One of the most difficult concepts for non-geology majors to comprehend is how bacteria serve as a platform for different mineralization reactions. In our three-week laboratory practice, students learn the main principles and conditions required for an induced bacterial mineralization. Upon completion of the laboratory experience, students will: 1) learn how microbial-induced mineralization (such as calcium carbonate formation) is affected by differential media and growth conditions; 2) understand how bacterial physiology affects any induced in situ or in vitro mineralization; 3) comprehend how growing conditions and bacterial physiologies interrelate, resulting in differential crystal formation. The teaching-learning process was assessed using a pre-/posttest with an increase from 26% to 76% in the number of positive answers from the students. We also measured the students’ proficiency while conducting specific technical tasks, revealing no major difficulties while conducting the experiments. A final questionnaire was provided with satisfactory evaluations from the students regarding the organization and content of the practices. 84–86% of the students agreed that the exercises improved their knowledge in geomicrobiology and would like to attend similar laboratories in the future. Such response is the best indicator that the laboratory practice can be implemented in any undergraduate/graduate microbiology course to effectively teach basic geomicrobiology concepts to non-geology majors.

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          Nanoscale detection of organic signatures in carbonate microbialites.

          Microbialites are sedimentary deposits associated with microbial mat communities and are thought to be evidence of some of the oldest life on Earth. Despite extensive studies of such deposits, little is known about the role of microorganisms in their formation. In addition, unambiguous criteria proving their biogenicity have yet to be established. In this study, we characterize modern calcareous microbialites from the alkaline Lake Van, Turkey, at the nanometer scale by combining x-ray and electron microscopies. We describe a simple way to locate microorganisms entombed in calcium carbonate precipitates by probing aromatic carbon functional groups and peptide bonds. Near-edge x-ray absorption fine structure spectra at the C and N K-edges provide unique signatures for microbes. Aragonite crystals, which range in size from 30 to 100 nm, comprise the largest part of the microbialites. These crystals are surrounded by a 10-nm-thick amorphous calcium carbonate layer containing organic molecules and are embedded in an organic matrix, likely consisting of polysaccharides, which helps explain the unusual sizes and shapes of these crystals. These results provide biosignatures for these deposits and suggest that microbial organisms significantly impacted the mineralogy of Lake Van carbonates.
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            Experimental and numerical modeling of bacterially induced pH increase and calcite precipitation in saline aquifers

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              Microbes as Geologic Agents: Their Role in Mineral Formation

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                Author and article information

                Journal
                J Microbiol Biol Educ
                J Microbiol Biol Educ
                JMBE
                Journal of Microbiology & Biology Education : JMBE
                American Society of Microbiology
                1935-7877
                1935-7885
                2013
                02 December 2013
                : 14
                : 2
                : 206-212
                Affiliations
                [1 ]Soil and Water Science Department, University of Florida, Gainesville, FL 32610-3610
                [2 ]Biology Department, University of Puerto Rico-Humacao, Humacao, PR 00791
                Author notes
                [* ]Corresponding author. Mailing address: Soil and Water Science Department, University of Florida, 2033 Mowry Road – Room 330E, PO Box 103610, Gainesville, FL 32610-3610. Phone: 352-273-8195. Fax: 352-273-5645. E-mail: mmarvasi@ 123456ufl.edu .
                Article
                jmbe-14-206
                10.1128/jmbe.v14i2.578
                3867758
                bed1810d-f5e0-4b07-8c8b-97a6b61ece3d
                ©2013 Author(s). Published by the American Society for Microbiology.

                This is an Open Access article distributed under the terms of the a Creative Commons Attribution – Noncommercial – Share Alike 3.0 Unported License ( http://creativecommons.org/licenses/by-nc-sa/3.0/), which permits unrestricted non-commercial use and distribution, provided the original work is properly cited.

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