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      Distant Metastasis Occurs Late during the Genetic Evolution of Pancreatic Cancer

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          Summary

          Metastasis, the dissemination and growth of neoplastic cells in an organ distinct from that in which they originated 1 2 , is the most common cause of death in cancer patients. This is particularly true for pancreatic cancers, where most patients are diagnosed with metastatic disease and few show a sustained response to chemo- or radiation therapy 3 . Whether the dismal prognosis of patients with pancreatic cancer compared to patients with other types of cancer is a result of late diagnosis or early dissemination of disease to distant organs is not known. Here we rely on data generated by sequencing the genomes of seven pancreatic cancer metastases to evaluate the clonal relationships among primary and metastatic cancers. We find that clonal populations that give rise to distant metastases are represented within the primary carcinoma, but these clones are genetically evolved from the original parental, non-metastatic clone. Thus, genetic heterogeneity of metastases reflects that within the primary carcinoma. A quantitative analysis of the timing of the genetic evolution of pancreatic cancer was performed, indicating at least a decade between the occurrence of the initiating mutation and the birth of the parental, non-metastatic founder cell. At least five more years are required for the acquisition of metastatic ability and patients die an average of two years thereafter. These data provide novel insights into the genetic features underlying pancreatic cancer progression and define a broad time window of opportunity for early detection to prevent deaths from metastatic disease.

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          Most cited references21

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          Genetic instabilities in human cancers.

          Whether and how human tumours are genetically unstable has been debated for decades. There is now evidence that most cancers may indeed be genetically unstable, but that the instability exists at two distinct levels. In a small subset of tumours, the instability is observed at the nucleotide level and results in base substitutions or deletions or insertions of a few nucleotides. In most other cancers, the instability is observed at the chromosome level, resulting in losses and gains of whole chromosomes or large portions thereof. Recognition and comparison of these instabilities are leading to new insights into tumour pathogenesis.
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            Core signaling pathways in human pancreatic cancers revealed by global genomic analyses.

            There are currently few therapeutic options for patients with pancreatic cancer, and new insights into the pathogenesis of this lethal disease are urgently needed. Toward this end, we performed a comprehensive genetic analysis of 24 pancreatic cancers. We first determined the sequences of 23,219 transcripts, representing 20,661 protein-coding genes, in these samples. Then, we searched for homozygous deletions and amplifications in the tumor DNA by using microarrays containing probes for approximately 10(6) single-nucleotide polymorphisms. We found that pancreatic cancers contain an average of 63 genetic alterations, the majority of which are point mutations. These alterations defined a core set of 12 cellular signaling pathways and processes that were each genetically altered in 67 to 100% of the tumors. Analysis of these tumors' transcriptomes with next-generation sequencing-by-synthesis technologies provided independent evidence for the importance of these pathways and processes. Our data indicate that genetically altered core pathways and regulatory processes only become evident once the coding regions of the genome are analyzed in depth. Dysregulation of these core pathways and processes through mutation can explain the major features of pancreatic tumorigenesis.
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              Comparative lesion sequencing provides insights into tumor evolution.

              We show that the times separating the birth of benign, invasive, and metastatic tumor cells can be determined by analysis of the mutations they have in common. When combined with prior clinical observations, these analyses suggest the following general conclusions about colorectal tumorigenesis: (i) It takes approximately 17 years for a large benign tumor to evolve into an advanced cancer but <2 years for cells within that cancer to acquire the ability to metastasize; (ii) it requires few, if any, selective events to transform a highly invasive cancer cell into one with the capacity to metastasize; (iii) the process of cell culture ex vivo does not introduce new clonal mutations into colorectal tumor cell populations; and (iv) the rates at which point mutations develop in advanced cancers are similar to those of normal cells. These results have important implications for understanding human tumor pathogenesis, particularly those associated with metastasis.
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                Author and article information

                Journal
                0410462
                6011
                Nature
                Nature
                Nature
                0028-0836
                1476-4687
                14 July 2011
                28 October 2010
                02 August 2011
                : 467
                : 7319
                : 1114-1117
                Affiliations
                [1 ]Department of Pathology, The Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins Medical Institutions, Baltimore Maryland 21231 USA
                [2 ]Department of Oncology, The Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins Medical Institutions, Baltimore Maryland 21231 USA
                [3 ]Department of Surgery, The Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins Medical Institutions, Baltimore Maryland 21231 USA
                [4 ]The Ludwig Center for Cancer Genetics and Therapeutics and The Howard Hughes Medical Institute at The Johns Hopkins Kimmel Cancer Center, Baltimore, Maryland 21231 USA
                [5 ]Program for Evolutionary Dynamics, Department of Mathematics, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138 USA
                [6 ]School of Mathematics, University of Edinburgh, Edinburgh EH9-3JZ, UK
                Author notes
                [* ]Correspondence and requests for materials should be addressed to ciacobu@ 123456jhmi.edu .
                [†]

                Joint first authors

                Author Contributions Sample collection and processing was performed by CID, SY, YZ, BF, and MK. Microdissection, DNA extractions and whole genome amplification reactions were performed by SY. Sequencing was performed by SJ. Copy number analyses were performed by RL. Computational models and estimates of clonal evolution were performed by IB, TA and MAN. CID, SY, SJ, RHH, JRE, VEV, KWK and BV directed the research. CID, BV, and SY wrote the manuscript, which all authors have approved.

                Article
                nihpa236202
                10.1038/nature09515
                3148940
                20981102
                a2304703-0efb-4c92-82c9-1f9532ae3fcb

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                History
                Funding
                Funded by: National Cancer Institute : NCI
                Award ID: R37 CA043460-26 || CA
                Funded by: National Cancer Institute : NCI
                Award ID: R37 CA043460-25 || CA
                Funded by: National Cancer Institute : NCI
                Award ID: R37 CA043460-24 || CA
                Funded by: National Institute of General Medical Sciences : NIGMS
                Award ID: R01 GM078986-04 || GM
                Funded by: National Institute of General Medical Sciences : NIGMS
                Award ID: R01 GM078986-03 || GM
                Funded by: National Institute of General Medical Sciences : NIGMS
                Award ID: R01 GM078986-02 || GM
                Funded by: National Cancer Institute : NCI
                Award ID: R01 CA121113-05 || CA
                Funded by: National Cancer Institute : NCI
                Award ID: R01 CA121113-04 || CA
                Funded by: National Cancer Institute : NCI
                Award ID: R01 CA121113-03 || CA
                Funded by: National Cancer Institute : NCI
                Award ID: R01 CA057345-10 || CA
                Funded by: National Cancer Institute : NCI
                Award ID: R01 CA057345-09 || CA
                Funded by: National Cancer Institute : NCI
                Award ID: R01 CA057345-08 || CA
                Funded by: National Cancer Institute : NCI
                Award ID: P50 CA062924-12 || CA
                Funded by: National Cancer Institute : NCI
                Award ID: P50 CA062924-11 || CA
                Funded by: National Cancer Institute : NCI
                Award ID: P50 CA062924-10 || CA
                Funded by: National Cancer Institute : NCI
                Award ID: K08 CA106610-05 || CA
                Funded by: National Cancer Institute : NCI
                Award ID: K08 CA106610-04 || CA
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