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      Platelets derived citrullinated proteins and microparticles are potential autoantibodies ACPA targets in RA patients

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          Abstract

          Citrullinated neoepitopes have emerged as key triggers of autoantibodies anti-citrullinated protein antibodies (ACPA) synthesis in rheumatoid arthritis (RA) patients. Apart from their critical role in homeostasis and thrombosis, platelets have a significant contribution to inflammation as well. Although anuclear in nature, platelets have an intricate post-translational modification machinery. Till now, citrullination in platelets and its contribution to trigger autoantibodies ACPA production in RA is an unexplored research direction. Herein, we investigated the expression of peptidylarginine deiminase (PAD) enzymes and citrullinated proteins/peptides in the human platelets and platelet derived microparticles (PDP). Both PAD4 mRNA and protein, but not the other PAD isoforms, are detectable in the human platelets. With a strict filtering criterion,108 citrullination sites present on 76 proteins were identified in the human platelets, and 55 citrullinated modifications present on 37 different proteins were detected in the PDPs. Among them, some are well-known citrullinated autoantigens associated with RA. Citrullinated forms of thrombospondin-1, β-actin, and platelet factor-4 (also known as CXCL4) are highly immunogenic and bound by autoantibodies ACPA. Furthermore, ACPA from RA sera and synovial fluids recognized citrullinated proteins from platelets and significantly activated them as evidenced by P-selectin upregulation and sCD40 L secretion. These results clearly demonstrate the presence of citrullinated autoantigens in platelets and PDPs, thus could serve as potential targets of ACPA in RA.

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          Most cited references50

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            MaxQuant is one of the most frequently used platforms for mass-spectrometry (MS)-based proteomics data analysis. Since its first release in 2008, it has grown substantially in functionality and can be used in conjunction with more MS platforms. Here we present an updated protocol covering the most important basic computational workflows, including those designed for quantitative label-free proteomics, MS1-level labeling and isobaric labeling techniques. This protocol presents a complete description of the parameters used in MaxQuant, as well as of the configuration options of its integrated search engine, Andromeda. This protocol update describes an adaptation of an existing protocol that substantially modifies the technique. Important concepts of shotgun proteomics and their implementation in MaxQuant are briefly reviewed, including different quantification strategies and the control of false-discovery rates (FDRs), as well as the analysis of post-translational modifications (PTMs). The MaxQuant output tables, which contain information about quantification of proteins and PTMs, are explained in detail. Furthermore, we provide a short version of the workflow that is applicable to data sets with simple and standard experimental designs. The MaxQuant algorithms are efficiently parallelized on multiple processors and scale well from desktop computers to servers with many cores. The software is written in C# and is freely available at http://www.maxquant.org.
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              The american rheumatism association 1987 revised criteria for the classification of rheumatoid arthritis

              The revised criteria for the classification of rheumatoid arthritis (RA) were formulated from a computerized analysis of 262 contemporary, consecutively studied patients with RA and 262 control subjects with rheumatic diseases other than RA (non-RA). The new criteria are as follows: 1) morning stiffness in and around joints lasting at least 1 hour before maximal improvement; 2) soft tissue swelling (arthritis) of 3 or more joint areas observed by a physician; 3) swelling (arthritis) of the proximal interphalangeal, metacarpophalangeal, or wrist joints; 4) symmetric swelling (arthritis); 5) rheumatoid nodules; 6) the presence of rheumatoid factor; and 7) radiographic erosions and/or periarticular osteopenia in hand and/or wrist joints. Criteria 1 through 4 must have been present for at least 6 weeks. Rheumatoid arthritis is defined by the presence of 4 or more criteria, and no further qualifications (classic, definite, or probable) or list of exclusions are required. In addition, a "classification tree" schema is presented which performs equally as well as the traditional (4 of 7) format. The new criteria demonstrated 91-94% sensitivity and 89% specificity for RA when compared with non-RA rheumatic disease control subjects.
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                Author and article information

                Contributors
                Journal
                Front Immunol
                Front Immunol
                Front. Immunol.
                Frontiers in Immunology
                Frontiers Media S.A.
                1664-3224
                24 January 2023
                2023
                : 14
                : 1084283
                Affiliations
                [1] 1 Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University , Wuhan, China
                [2] 2 Department of Rheumatology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology , Wuhan, China
                [3] 3 Department of Dermatology, Hospital affiliated to Central China Normal University , Wuhan, China
                [4] 4 Department of Environmental and Biosciences, School of Business, Innovation and Sustainability, Halmstad University , Halmstad, Sweden
                [5] 5 Division of Medical Inflammation Research, Department of Medical Biochemistry and Biophysics, Karolinska Institute , Stockholm, Sweden
                Author notes

                Edited by: Gerald Nabozny, Boehringer Ingelheim (United States), United States

                Reviewed by: Meera Ramanujam, Aro biotherapeutics, United States; Shaozhe Cai, Huazhong University of Science and Technology, China

                *Correspondence: Hui Geng, genghui@ 123456mail.ccnu.edu.cn

                †These authors share first authorship

                This article was submitted to Autoimmune and Autoinflammatory Disorders : Autoimmune Disorders, a section of the journal Frontiers in Immunology

                Article
                10.3389/fimmu.2023.1084283
                9902922
                9bdfccbd-47c2-4879-b2e4-dbef715e229e
                Copyright © 2023 Xu, Du, Xing, Chen, Wan, Wang, Xiong, Nandakumar, Holmdahl and Geng

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 30 October 2022
                : 12 January 2023
                Page count
                Figures: 5, Tables: 3, Equations: 0, References: 50, Pages: 11, Words: 5987
                Funding
                This work was supported by the Natural Science Foundation of China (32170906), Fundamental Research Funds for the Central University of Central China Normal University (CCNU20TS02112), and the Swedish Research Council (2019-01209).
                Categories
                Immunology
                Original Research

                Immunology
                rheumatoid arthritis,citrullination,platelets,anti-citrullinated protein antibodies (acpa),platelet derived microparticles (pdp)

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