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      Chromatin control of human cytomegalovirus infection

      review-article
      1 , 1 , 2 , 1 , 2 ,
      mBio
      American Society for Microbiology
      herpesvirus, HHV, epigenetics, chromatin, cytomegalovirus, CMV, histone, transcription factors

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          ABSTRACT

          Human cytomegalovirus (HCMV) is a betaherpesvirus that establishes lifelong infection in its host and can cause severe comorbidities in individuals with suppressed or compromised immune systems. The lifecycle of HCMV consists of lytic and latent phases, largely dependent upon the cell type infected and whether transcription from the major immediate early locus can ensue. Control of this locus, which acts as a critical “switch” region from where the lytic gene expression cascade originates, as well as regulation of the additional ~235 kilobases of virus genome, occurs through chromatinization with cellular histone proteins after infection. Upon infection of a host cell, an initial intrinsic antiviral response represses gene expression from the incoming genome, which is relieved in permissive cells by viral and host factors in concert. Latency is established in a subset of hematopoietic cells, during which viral transcription is largely repressed while the genome is maintained. As these latently infected cells differentiate, the cellular milieu and epigenetic modifications change, giving rise to the initial stages of virus reactivation from latency. Thus, throughout the cycle of infection, chromatinization, chromatin modifiers, and the recruitment of specific transcription factors influence the expression of genes from the HCMV genome. In this review, we discuss epigenetic regulation of the HCMV genome during the different phases of infection, with an emphasis on recent reports that add to our current perspective.

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          Most cited references151

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          Histone H3K27ac separates active from poised enhancers and predicts developmental state.

          Developmental programs are controlled by transcription factors and chromatin regulators, which maintain specific gene expression programs through epigenetic modification of the genome. These regulatory events at enhancers contribute to the specific gene expression programs that determine cell state and the potential for differentiation into new cell types. Although enhancer elements are known to be associated with certain histone modifications and transcription factors, the relationship of these modifications to gene expression and developmental state has not been clearly defined. Here we interrogate the epigenetic landscape of enhancer elements in embryonic stem cells and several adult tissues in the mouse. We find that histone H3K27ac distinguishes active enhancers from inactive/poised enhancer elements containing H3K4me1 alone. This indicates that the amount of actively used enhancers is lower than previously anticipated. Furthermore, poised enhancer networks provide clues to unrealized developmental programs. Finally, we show that enhancers are reset during nuclear reprogramming.
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            Crystal structure of the nucleosome core particle at 2.8 A resolution.

            The X-ray crystal structure of the nucleosome core particle of chromatin shows in atomic detail how the histone protein octamer is assembled and how 146 base pairs of DNA are organized into a superhelix around it. Both histone/histone and histone/DNA interactions depend on the histone fold domains and additional, well ordered structure elements extending from this motif. Histone amino-terminal tails pass over and between the gyres of the DNA superhelix to contact neighbouring particles. The lack of uniformity between multiple histone/DNA-binding sites causes the DNA to deviate from ideal superhelix geometry.
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              Benefits and limitations of genome-wide association studies

              Genome-wide association studies (GWAS) involve testing genetic variants across the genomes of many individuals to identify genotype-phenotype associations. GWAS have revolutionized the field of complex disease genetics over the past decade, providing numerous compelling associations for human complex traits and diseases. Despite clear successes in identifying novel disease susceptibility genes and biological pathways and in translating these findings into clinical care, GWAS have not been without controversy. Prominent criticisms include concerns that GWAS will eventually implicate the entire genome in disease predisposition and that most association signals reflect variants and genes with no direct biological relevance to disease. In this Review, we comprehensively assess the benefits and limitations of GWAS in human populations and discuss the relevance of performing more GWAS.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Writing – original draftRole: Writing – review and editing
                Role: ConceptualizationRole: Writing – original draftRole: Writing – review and editing
                Role: Funding acquisitionRole: SupervisionRole: Writing – review and editing
                Role: Editor
                Journal
                mBio
                mBio
                mBio
                mBio
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                2150-7511
                Jul-Aug 2023
                13 July 2023
                13 July 2023
                : 14
                : 4
                : e00326-23
                Affiliations
                [1 ] Infection Biology, Global Center for Pathogen and Human Health Research, Lerner Research Institute, Cleveland Clinic; , Cleveland, Ohio, USA
                [2 ] Molecular Medicine, Cleveland Clinic Lerner College of Medicine of Case Western Reserve University, Cleveland Clinic; , Cleveland, Ohio, USA
                Ohio State University; , Columbus, Ohio, USA
                Author notes
                Address correspondence to Christine M. O'Connor, oconnoc6@ 123456ccf.org

                The authors declare no conflict of interest.

                Author information
                https://orcid.org/0000-0002-8968-225X
                https://orcid.org/0000-0001-8882-6701
                https://orcid.org/0000-0003-4943-3774
                Article
                00326-23 mbio.00326-23
                10.1128/mbio.00326-23
                10470543
                37439556
                6dfdc192-da3f-4315-af85-5a5284f7714f
                Copyright © 2023 Matthews et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                Page count
                supplementary-material: 0, authors: 3, Figures: 2, Tables: 0, Equations: 0, References: 151, Pages: 16, Words: 11771
                Funding
                Funded by: HHS | National Institutes of Health (NIH);
                Award ID: R01AI153348, R01AI150931
                Award Recipient :
                Categories
                Minireview
                virology, Virology
                Custom metadata
                July/August 2023

                Life sciences
                herpesvirus,hhv,epigenetics,chromatin,cytomegalovirus,cmv,histone,transcription factors
                Life sciences
                herpesvirus, hhv, epigenetics, chromatin, cytomegalovirus, cmv, histone, transcription factors

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