Hatice Akarsu: Role: ConceptualizationRole: Data curationRole: Formal analysisRole: MethodologyRole:
SoftwareRole: Writing – original draftRole: Writing – review & editing
Patricia Bordes: Role: SupervisionRole: Validation
Moise Mansour:
ORCID: http://orcid.org/0000-0003-1028-6113
Role: Validation
Donna-Joe Bigot: Role: Validation
Pierre Genevaux:
ORCID: http://orcid.org/0000-0001-7539-3126
Role: ConceptualizationRole: Funding acquisitionRole: MethodologyRole: Project administrationRole:
SupervisionRole: ValidationRole: Writing – review & editing
Laurent Falquet:
ORCID: http://orcid.org/0000-0001-8102-7579
Role: ConceptualizationRole: Funding acquisitionRole: MethodologyRole: Project administrationRole:
SupervisionRole: Writing – review & editing
Mark M. Tanaka: Role: Editor
Journal ID (nlm-ta): PLoS Comput Biol
Journal ID (iso-abbrev): PLoS Comput. Biol
Journal ID (publisher-id): plos
Journal ID (pmc): ploscomp
Title:
PLoS Computational Biology
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1553-734X
ISSN
(Electronic):
1553-7358
Publication date
(Electronic):
25
April
2019
Publication date Collection:
April
2019
Volume: 15
Issue: 4
Electronic Location Identifier: e1006946
Affiliations
[1
]
Department of Biology, University of Fribourg & Swiss Institute of Bioinformatics,
Fribourg, Switzerland
[2
]
Laboratoire de Microbiologie et de Génétique Moléculaires (LMGM), Centre de Biologie
Intégrative (CBI), Université de Toulouse, CNRS, UPS, Toulouse, France
University of New South Wales, AUSTRALIA
Author notes
The authors have declared that no competing interests exist.
Author information
Article
Publisher ID:
PCOMPBIOL-D-18-01701
DOI: 10.1371/journal.pcbi.1006946
PMC ID: 6504116
PubMed ID: 31022176
SO-VID: 3f08618f-c4b9-4105-8f0e-39a757f4e17c
Copyright © © 2019 Akarsu et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
Funded by: funder-id http://dx.doi.org/10.13039/501100001711, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung;
Award ID: CRSII3_160703
Award Recipient
:
ORCID: http://orcid.org/0000-0001-8102-7579
Laurent Falquet
This work was funded (LF and PG) by the Swiss National Science Foundation (CRSII3_160703,
http://www.snf.ch). The funders had no role in study design, data collection and analysis, decision
to publish, or preparation of the manuscript.
Subject:
Research Article
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Biology and Life Sciences
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Toxicology
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Toxic Agents
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Toxins
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Medicine and Health Sciences
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Pathology and Laboratory Medicine
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Toxicology
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Toxic Agents
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Toxins
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Biology and Life Sciences
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Toxicology
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Antitoxins
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Medicine and Health Sciences
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Pathology and Laboratory Medicine
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Toxicology
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Antitoxins
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Physical sciences
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Mathematics
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Probability theory
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Markov models
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Hidden Markov models
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Biology and Life Sciences
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Organisms
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Bacteria
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Actinobacteria
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Biology and Life Sciences
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Biochemistry
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Proteins
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Protein Domains
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Biology and Life Sciences
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Genetics
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DNA
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Operons
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Biology and Life Sciences
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Biochemistry
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Nucleic Acids
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DNA
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Operons
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Biology and Life Sciences
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Microbiology
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Bacteriology
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Bacterial Genetics
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Toxin-Antitoxin Modules
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Biology and Life Sciences
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Genetics
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Microbial Genetics
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Bacterial Genetics
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Toxin-Antitoxin Modules
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Biology and Life Sciences
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Microbiology
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Bacteriology
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Bacterial Physiology
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Toxin-Antitoxin Modules
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Biology and Life Sciences
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Microbiology
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Microbial Physiology
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Bacterial Physiology
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Toxin-Antitoxin Modules
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Biology and Life Sciences
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Toxicology
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Toxic Agents
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Toxins
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Bacterial Toxins
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Toxin-Antitoxin Modules
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Medicine and Health Sciences
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Pathology and Laboratory Medicine
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Toxicology
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Toxic Agents
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Toxins
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Bacterial Toxins
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Toxin-Antitoxin Modules
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Research and Analysis Methods
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Database and Informatics Methods
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Biological Databases
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Genomic Databases
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Biology and Life Sciences
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Computational Biology
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Genome Analysis
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Genomic Databases
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Biology and Life Sciences
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Genetics
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Genomics
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Genome Analysis
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Genomic Databases