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      The Importance of ncRNAs as Epigenetic Mechanisms in Phenotypic Variation and Organic Evolution

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          Abstract

          Neo-Darwinian explanations of organic evolution have settled on mutation as the principal factor in producing evolutionary novelty. Mechanistic characterizations have been also biased by the classic dogma of molecular biology, where only proteins regulate gene expression. This together with the rearrangement of genetic information, in terms of genes and chromosomes, was considered the cornerstone of evolution at the level of natural populations. This predominant view excluded both alternative explanations and phenomenologies that did not fit its paradigm. With the discovery of non-coding RNAs (ncRNAs) and their role in the control of genetic expression, new mechanisms arose providing heuristic power to complementary explanations to evolutionary processes overwhelmed by mainstream genocentric views. Viruses, epimutation, paramutation, splicing, and RNA editing have been revealed as paramount functions in genetic variations, phenotypic plasticity, and diversity. This article discusses how current epigenetic advances on ncRNAs have changed the vision of the mechanisms that generate variation, how organism-environment interaction can no longer be underestimated as a driver of organic evolution, and how it is now part of the transgenerational inheritance and evolution of species.

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          Most cited references169

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          Small silencing RNAs: an expanding universe.

          Since the discovery in 1993 of the first small silencing RNA, a dizzying number of small RNA classes have been identified, including microRNAs (miRNAs), small interfering RNAs (siRNAs) and Piwi-interacting RNAs (piRNAs). These classes differ in their biogenesis, their modes of target regulation and in the biological pathways they regulate. There is a growing realization that, despite their differences, these distinct small RNA pathways are interconnected, and that small RNA pathways compete and collaborate as they regulate genes and protect the genome from external and internal threats.
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            Central dogma of molecular biology.

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              Mobile elements: drivers of genome evolution.

              Mobile elements within genomes have driven genome evolution in diverse ways. Particularly in plants and mammals, retrotransposons have accumulated to constitute a large fraction of the genome and have shaped both genes and the entire genome. Although the host can often control their numbers, massive expansions of retrotransposons have been tolerated during evolution. Now mobile elements are becoming useful tools for learning more about genome evolution and gene function.
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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                22 December 2017
                2017
                : 8
                : 2483
                Affiliations
                Instituto de Entomología, Universidad Metropolitana de Ciencias de la Educación , Santiago, Chile
                Author notes

                Edited by: Guenther Witzany, Telos-Philosophische Praxis, Austria

                Reviewed by: Diego Franco, Universidad de Jaén, Spain; Claes Wahlestedt, Leonard M. Miller School of Medicine, United States

                *Correspondence: Daniel Frías-Lasserre daniel.frias@ 123456umce.cl

                This article was submitted to Virology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2017.02483
                5744636
                29312192
                38dd6697-fabd-4c9b-9a99-b5514107330f
                Copyright © 2017 Frías-Lasserre and Villagra.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 28 July 2017
                : 29 November 2017
                Page count
                Figures: 1, Tables: 0, Equations: 0, References: 213, Pages: 13, Words: 11984
                Categories
                Microbiology
                Review

                Microbiology & Virology
                non-codingrnas,phenotypic plasticity,biodiversity,adaptation,evolution
                Microbiology & Virology
                non-codingrnas, phenotypic plasticity, biodiversity, adaptation, evolution

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