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      Is Open Access

      The future is 2D: spectral‐temporal fitting of dynamic MRS data provides exponential gains in precision over conventional approaches

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      1 ,
      Magnetic Resonance in Medicine
      John Wiley and Sons Inc.
      dynamic fitting, dynamic MRS, magnetic resonance spectroscopy (MRS), quantification

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          Abstract

          Purpose

          Many MRS paradigms produce 2D spectral‐temporal datasets, including diffusion‐weighted, functional, and hyperpolarized and enriched (carbon‐13, deuterium) experiments. Conventionally, temporal parameters—such as T 2, T 1, or diffusion constants—are assessed by first fitting each spectrum independently and subsequently fitting a temporal model (1D fitting). We investigated whether simultaneously fitting the entire dataset using a single spectral‐temporal model (2D fitting) would improve the precision of the relevant temporal parameter.

          Methods

          We derived a Cramer Rao lower bound for the temporal parameters for both 1D and 2D approaches for 2 experiments: a multi‐echo experiment designed to estimate metabolite T 2s, and a functional MRS experiment designed to estimate fractional change ( δ ) in metabolite concentrations. We investigated the dependence of the relative standard deviation (SD) of T 2 in multi‐echo and δ in functional MRS.

          Results

          When peaks were spectrally distant, 2D fitting improved precision by approximately 20% relative to 1D fitting, regardless of the experiment and other parameter values. These gains increased exponentially as peaks drew closer. Dependence on temporal model parameters was weak to negligible.

          Conclusion

          Our results strongly support a 2D approach to MRS fitting where applicable, and particularly in nuclei such as hydrogen and deuterium, which exhibit substantial spectral overlap.

          Abstract

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          Most cited references53

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          Automatic quantitation of localized in vivo 1H spectra with LCModel.

          The LCModel method analyzes an in vivo spectrum as a Linear Combination of Model in vitro spectra from individual metabolite solutions. Complete model spectra, rather than individual resonances, are used in order to incorporate maximum prior information into the analysis. A nearly model-free constrained regularization method automatically accounts for the baseline and lineshape in vivo without imposing a restrictive parameterized form on them. LCModel is automatic (non-interactive) with no subjective input. Approximately maximum-likelihood estimates of the metabolite concentrations and their uncertainties (Cramér-Rao lower bounds) are obtained. LCModel analyses of spectra from users with fields from 1.5 to 9.4 T and a wide range of sequences, particularly with short TE, are used here to illustrate the capabilities and limitations of LCModel and proton MRS. Copyright 2001 John Wiley & Sons, Ltd.
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            Gannet: A batch-processing tool for the quantitative analysis of gamma-aminobutyric acid–edited MR spectroscopy spectra.

            The purpose of this study is to describe the Gannet toolkit for the quantitative batch analysis of gamma-aminobutyric acid (GABA) -edited MRS data.
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              A constrained least-squares approach to the automated quantitation of in vivo ¹H magnetic resonance spectroscopy data.

              Totally Automatic Robust Quantitation in NMR (TARQUIN), a new method for the fully automatic analysis of short echo time in vivo (1)H Magnetic resonance spectroscopy is presented. Analysis is performed in the time domain using non-negative least squares, and a new method for applying soft constraints to signal amplitudes is used to improve fitting stability. Initial point truncation and Hankel singular value decomposition water removal are used to reduce baseline interference. Three methods were used to test performance. First, metabolite concentrations from six healthy volunteers at 3 T were compared with LCModel™. Second, a Monte-Carlo simulation was performed and results were compared with LCModel™ to test the accuracy of the new method. Finally, the new algorithm was applied to 1956 spectra, acquired clinically at 1.5 T, to test robustness to noisy, abnormal, artifactual, and poorly shimmed spectra. Discrepancies of less than approximately 20% were found between the main metabolite concentrations determined by TARQUIN and LCModel™ from healthy volunteer data. The Monte-Carlo simulation revealed that errors in metabolite concentration estimates were comparable with LCModel™. TARQUIN analyses were also found to be robust to clinical data of variable quality. In conclusion, TARQUIN has been shown to be an accurate and robust algorithm for the analysis of magnetic resonance spectroscopy data making it suitable for use in a clinical setting. © 2010 Wiley-Liss, Inc.
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                Author and article information

                Contributors
                assaf.tal@weizmann.ac.il
                Journal
                Magn Reson Med
                Magn Reson Med
                10.1002/(ISSN)1522-2594
                MRM
                Magnetic Resonance in Medicine
                John Wiley and Sons Inc. (Hoboken )
                0740-3194
                1522-2594
                19 September 2022
                February 2023
                : 89
                : 2 ( doiID: 10.1002/mrm.v89.2 )
                : 499-507
                Affiliations
                [ 1 ] Department of Chemical and Biological Physics Weizmann Institute of Science Rehovot Israel
                Author notes
                [*] [* ] Correspondence

                Assaf Tal, PhD, Department of Chemical and Biological Physics, Weizmann Institute of Science, 234 Herzel St., Rehovot 7610001, Israel.

                Email: assaf.tal@ 123456weizmann.ac.il Twitter: @AssafMRILab

                Author information
                https://orcid.org/0000-0001-6718-6522
                Article
                MRM29456
                10.1002/mrm.29456
                10087547
                36121336
                38d44702-30e2-4981-b13a-2c3fa1ab45ea
                © 2022 The Author. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 01 August 2022
                : 22 June 2022
                : 23 August 2022
                Page count
                Figures: 4, Tables: 0, Pages: 9, Words: 4914
                Funding
                Funded by: Israel Science Foundation , doi 10.13039/501100003977;
                Award ID: 416/20
                Categories
                Technical Note
                Technical Note–Spectroscopic Methodology
                Custom metadata
                2.0
                February 2023
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.2.7 mode:remove_FC converted:11.04.2023

                Radiology & Imaging
                dynamic fitting,dynamic mrs,magnetic resonance spectroscopy (mrs),quantification

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