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      Spectral tuning of adaptation supports coding of sensory context in auditory cortex

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          Abstract

          Perception of vocalizations and other behaviorally relevant sounds requires integrating acoustic information over hundreds of milliseconds. Sound-evoked activity in auditory cortex typically has much shorter latency, but the acoustic context, i. e., sound history, can modulate sound evoked activity over longer periods. Contextual effects are attributed to modulatory phenomena, such as stimulus-specific adaption and contrast gain control. However, an encoding model that links context to natural sound processing has yet to be established. We tested whether a model in which spectrally tuned inputs undergo adaptation mimicking short-term synaptic plasticity (STP) can account for contextual effects during natural sound processing. Single-unit activity was recorded from primary auditory cortex of awake ferrets during presentation of noise with natural temporal dynamics and fully natural sounds. Encoding properties were characterized by a standard linear-nonlinear spectro-temporal receptive field (LN) model and variants that incorporated STP-like adaptation. In the adapting models, STP was applied either globally across all input spectral channels or locally to subsets of channels. For most neurons, models incorporating local STP predicted neural activity as well or better than LN and global STP models. The strength of nonlinear adaptation varied across neurons. Within neurons, adaptation was generally stronger for spectral channels with excitatory than inhibitory gain. Neurons showing improved STP model performance also tended to undergo stimulus-specific adaptation, suggesting a common mechanism for these phenomena. When STP models were compared between passive and active behavior conditions, response gain often changed, but average STP parameters were stable. Thus, spectrally and temporally heterogeneous adaptation, subserved by a mechanism with STP-like dynamics, may support representation of the complex spectro-temporal patterns that comprise natural sounds across wide-ranging sensory contexts.

          Author summary

          Successfully discriminating between behaviorally relevant sounds such as vocalizations and environmental noise requires processing how acoustic information changes over many tens to hundreds of milliseconds. The sound-evoked activity measured for most auditory cortical neurons is relatively short (< 50 ms), so it is not clear how the auditory cortex encodes sound information over longer periods. In this study, we propose that nonlinear adaptation, mimicking the effects of synaptic short-term plasticity (STP), enables auditory neurons to encode longer and more complex spectro-temporal patterns. A model in which sound history is stored in the latent state of plastic synapses is able to describe responses of single cortical neurons to natural sounds better than a standard encoding model that does not include nonlinear adaptation. Moreover, STP-like adaptation can account for contextual effects on sound evoked activity that cannot be accounted for by standard encoding models.

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          Most cited references71

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          Spatio-temporal correlations and visual signalling in a complete neuronal population.

          Statistical dependencies in the responses of sensory neurons govern both the amount of stimulus information conveyed and the means by which downstream neurons can extract it. Although a variety of measurements indicate the existence of such dependencies, their origin and importance for neural coding are poorly understood. Here we analyse the functional significance of correlated firing in a complete population of macaque parasol retinal ganglion cells using a model of multi-neuron spike responses. The model, with parameters fit directly to physiological data, simultaneously captures both the stimulus dependence and detailed spatio-temporal correlations in population responses, and provides two insights into the structure of the neural code. First, neural encoding at the population level is less noisy than one would expect from the variability of individual neurons: spike times are more precise, and can be predicted more accurately when the spiking of neighbouring neurons is taken into account. Second, correlations provide additional sensory information: optimal, model-based decoding that exploits the response correlation structure extracts 20% more information about the visual scene than decoding under the assumption of independence, and preserves 40% more visual information than optimal linear decoding. This model-based approach reveals the role of correlated activity in the retinal coding of visual stimuli, and provides a general framework for understanding the importance of correlated activity in populations of neurons.
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            State-dependent computations: spatiotemporal processing in cortical networks.

            A conspicuous ability of the brain is to seamlessly assimilate and process spatial and temporal features of sensory stimuli. This ability is indispensable for the recognition of natural stimuli. Yet, a general computational framework for processing spatiotemporal stimuli remains elusive. Recent theoretical and experimental work suggests that spatiotemporal processing emerges from the interaction between incoming stimuli and the internal dynamic state of neural networks, including not only their ongoing spiking activity but also their 'hidden' neuronal states, such as short-term synaptic plasticity.
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              Neural networks with dynamic synapses.

              Transmission across neocortical synapses depends on the frequency of presynaptic activity (Thomson & Deuchars, 1994). Interpyramidal synapses in layer V exhibit fast depression of synaptic transmission, while other types of synapses exhibit facilitation of transmission. To study the role of dynamic synapses in network computation, we propose a unified phenomenological model that allows computation of the postsynaptic current generated by both types of synapses when driven by an arbitrary pattern of action potential (AP) activity in a presynaptic population. Using this formalism, we analyze different regimes of synaptic transmission and demonstrate that dynamic synapses transmit different aspects of the presynaptic activity depending on the average presynaptic frequency. The model also allows for derivation of mean-field equations, which govern the activity of large, interconnected networks. We show that the dynamics of synaptic transmission results in complex sets of regular and irregular regimes of network activity.
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                Author and article information

                Contributors
                Role: InvestigationRole: MethodologyRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: InvestigationRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: Project administrationRole: SoftwareRole: SupervisionRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Comput Biol
                PLoS Comput. Biol
                plos
                ploscomp
                PLoS Computational Biology
                Public Library of Science (San Francisco, CA USA )
                1553-734X
                1553-7358
                18 October 2019
                October 2019
                : 15
                : 10
                : e1007430
                Affiliations
                [1 ] Neuroscience Graduate Program, Oregon Health and Science University, Portland, OR, United States of America
                [2 ] Oregon Hearing Research Center, Oregon Health and Science University, Portland, OR, United States of America
                Radboud University, NETHERLANDS
                Author notes

                The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0001-5965-6926
                http://orcid.org/0000-0002-1854-5450
                http://orcid.org/0000-0003-4135-3104
                Article
                PCOMPBIOL-D-19-00173
                10.1371/journal.pcbi.1007430
                6821137
                31626624
                10a25c0e-6211-4ded-b51d-92f67907df99
                © 2019 Lopez Espejo et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 30 January 2019
                : 23 September 2019
                Page count
                Figures: 10, Tables: 0, Pages: 33
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/100000055, National Institute on Deafness and Other Communication Disorders;
                Award ID: R01 DC014950
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000055, National Institute on Deafness and Other Communication Disorders;
                Award ID: F31 DC016204
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000185, Defense Advanced Research Projects Agency;
                Award ID: D15AP00101
                Award Recipient :
                Funded by: ARCS Foundation Oregon Chapter
                Award Recipient :
                This work was supported by grants from the National Institutes of Health (SVD, R01 DC014950; ZPS, F31 DC016204; https://www.nidcd.nih.gov/), the Defense Advanced Research Projects Agency (SVD, D15AP00101; https://www.darpa.mil/), and a fellowship from the ARCS Foundation Oregon Chapter (ZPS; https://oregon.arcsfoundation.org/). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Cell Biology
                Cellular Types
                Animal Cells
                Neurons
                Biology and Life Sciences
                Neuroscience
                Cellular Neuroscience
                Neurons
                Biology and Life Sciences
                Neuroscience
                Neuronal Tuning
                Engineering and Technology
                Signal Processing
                Signal Filtering
                Linear Filters
                Biology and Life Sciences
                Computational Biology
                Computational Neuroscience
                Coding Mechanisms
                Biology and Life Sciences
                Neuroscience
                Computational Neuroscience
                Coding Mechanisms
                Biology and Life Sciences
                Physiology
                Sensory Physiology
                Auditory System
                Auditory Cortex
                Medicine and Health Sciences
                Physiology
                Sensory Physiology
                Auditory System
                Auditory Cortex
                Biology and Life Sciences
                Neuroscience
                Sensory Systems
                Auditory System
                Auditory Cortex
                Biology and Life Sciences
                Anatomy
                Brain
                Auditory Cortex
                Medicine and Health Sciences
                Anatomy
                Brain
                Auditory Cortex
                Biology and Life Sciences
                Neuroscience
                Cellular Neuroscience
                Synaptic Plasticity
                Biology and Life Sciences
                Neuroscience
                Developmental Neuroscience
                Synaptic Plasticity
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Vertebrates
                Amniotes
                Mammals
                Ferrets
                Biology and Life Sciences
                Neuroscience
                Cellular Neuroscience
                Neuronal Plasticity
                Custom metadata
                vor-update-to-uncorrected-proof
                2019-10-30
                The data underlying the results presented in the study are available at https://doi.org/10.5281/zenodo.3445557.

                Quantitative & Systems biology
                Quantitative & Systems biology

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